BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0103.p
         (162 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309772|ref|YP_003773864.1| DNA-binding ferritin-like prote...   317   3e-88
gi|300313798|ref|YP_003777890.1| low temperature-induced protein...    77   7e-16

>gi|300309772|ref|YP_003773864.1| DNA-binding ferritin-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score =  317 bits (812), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 155/164 (94%), Positives = 158/164 (96%), Gaps = 2/164 (1%)

Query: 1   MAKKNVAA--INIGINDKDRKKIADGLSKLLADTYTLYLKTHNFHWNVTGPMFNTLHLMF 58
           MAKKNVAA  INIGINDKDRKKIADGLSKLLADTYTLYLKTHNFHWNVTGPMFNTLHLMF
Sbjct: 1   MAKKNVAAPSINIGINDKDRKKIADGLSKLLADTYTLYLKTHNFHWNVTGPMFNTLHLMF 60

Query: 59  EGQYTELALAVDLIAERIRALGYPAPGSYKEFAKLSSIPEAEGVPAAEEMIRQLVAGQEA 118
           EGQY ELALAVDLIAERIRALGYPAPGSYKEFAKLSSIPEA+GVP A+EMI QLVAGQEA
Sbjct: 61  EGQYNELALAVDLIAERIRALGYPAPGSYKEFAKLSSIPEADGVPNAQEMIAQLVAGQEA 120

Query: 119 VTRTARSMFPAVDAAADEPTADLLTQRMQLHEKNAWMLRSLLEG 162
           VTRTARS+FP VDAAADEPTADLLTQRMQLHEKNAWMLRSLLEG
Sbjct: 121 VTRTARSIFPTVDAAADEPTADLLTQRMQLHEKNAWMLRSLLEG 164


>gi|300313798|ref|YP_003777890.1| low temperature-induced protein
           [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score = 77.0 bits (188), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 5/147 (3%)

Query: 13  INDKDRKKIADGLSKLLADTYTLYLKTHNFHWNVTGPMFNTLHLMFEGQYTELALAVDLI 72
           ++++ R+++   L+ LLAD + LYLKT NFHW+++GP F   HL+ + Q  ++    D +
Sbjct: 10  LSEQARQEVGGALTMLLADVFALYLKTKNFHWHMSGPHFRDYHLLLDDQSQQIIAITDAV 69

Query: 73  AERIRALGYPAPGSYKEFAKLSSIPEAEG---VPAAEEMIRQLVAGQEAVTRTARSMFPA 129
           AER+R +G     S     KL  + + +     PA  +M+ +L      +     +    
Sbjct: 70  AERVRKIGGTTLRSTGHIGKLQRLSDNDADFVTPA--DMLAELREDNLRLVGFMMATHEL 127

Query: 130 VDAAADEPTADLLTQRMQLHEKNAWML 156
            D   D  TA LL   +   E+ AW L
Sbjct: 128 CDQHGDVATASLLENWIDEAEQRAWFL 154


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 494,538
Number of extensions: 19060
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 162
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 84
Effective length of database: 1,250,540
Effective search space: 105045360
Effective search space used: 105045360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)