BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0100.p
         (327 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310042|ref|YP_003774134.1| 4-hydroxythreonine-4-phosphate ...   141   6e-35

>gi|300310042|ref|YP_003774134.1| 4-hydroxythreonine-4-phosphate
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 340

 Score =  141 bits (356), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 154/318 (48%), Gaps = 24/318 (7%)

Query: 7   SKPRIALTIGDPAGIGPELIVQLLALPAIGKRADVTLIGNRAAIERAANAVNAPIPQASD 66
           ++P +ALT G+PAGIGPE  + L A   +       L+G+ A + ++A  ++A +  A+ 
Sbjct: 2   NRPILALTCGEPAGIGPE--ISLRAAWELRHEVRCILLGDAALLAQSAYEIDAQMRVAA- 58

Query: 67  WLTIQDW----------------DGDVRE-YAPSVAGVDNGHFILDSLKLGTKLVTDGKA 109
            ++IQ W                D  V E   P V    NG  +L +L L  +    G  
Sbjct: 59  -ISIQAWRNSGLPHFPTDCLTVIDCPVAEPVRPGVLDARNGRAVLQTLDLAVQGALSGAF 117

Query: 110 DALCFAPLNKGAMRLGGMHEEDEMRWFAKLLNYDGPCGEL--NILNDLWTGRVTSHMPLK 167
            A+  APL K  +   G+       + A++ +       L       L     T+H+ LK
Sbjct: 118 AAIVTAPLQKSTINDAGVAFTGHTEYLAEVTHTPQVVMMLAGGQSPHLRVALATTHLALK 177

Query: 168 DVSSVLTVEGVAQAIVMLTDAFRIA-GKSEPRIGVCGFNPHNGDNGNYGREEIDVIEPGI 226
           DV + +T + +A+ + +L    R   G + PRI V G NPH G+NG  GREEI+VI P +
Sbjct: 178 DVPAAITADSLARTLDILHADLRSKFGIARPRILVTGLNPHAGENGYLGREEIEVISPAL 237

Query: 227 AMAAKKGYPSTGPFPADTIFLRAKNGQLDGIVSMYHDQGQIATKLLGFDVGVTVEGGLSI 286
             A  +G  + GP+PADT+F        D +++MYHDQG    K   F  G+ +  GL +
Sbjct: 238 EAARARGIDARGPYPADTLFQPKYLEDADCVLAMYHDQGLPVLKFASFGHGINITLGLPL 297

Query: 287 PITTPAHGTAYDIVGKGI 304
             T+  HGTA D+   G+
Sbjct: 298 IRTSVDHGTALDLAAAGL 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,074,555
Number of extensions: 46213
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 242
Effective length of database: 1,217,395
Effective search space: 294609590
Effective search space used: 294609590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)