BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0092.p
         (368 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309768|ref|YP_003773860.1| thiamine biosynthesis protein [...   570   e-164

>gi|300309768|ref|YP_003773860.1| thiamine biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 637

 Score =  570 bits (1469), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 277/295 (93%), Positives = 286/295 (96%), Gaps = 4/295 (1%)

Query: 47  MNANPKFLSATATVDEAAVQPLPNSRKIYVTGSRPDIRVPMREISQSDTPAMFGSEKNPP 106
           MNANPKFLSATATVDEAA+QPLPNSRKIYVTGSRPDIRVPMREISQ+DTPAMFGSEKNPP
Sbjct: 1   MNANPKFLSATATVDEAAIQPLPNSRKIYVTGSRPDIRVPMREISQADTPAMFGSEKNPP 60

Query: 107 IYVYDTSGPYTDPDVRIDIRNGLETPRLPWILERNDTEELDGPTSEYGRQRLNDPALAEL 166
           IYVYDTSGPYTDP+V+IDIR GL TPRLPWILER+DTEEL GPTSEYG+QRLNDPALAEL
Sbjct: 61  IYVYDTSGPYTDPEVKIDIRAGLSTPRLPWILERDDTEELPGPTSEYGQQRLNDPALAEL 120

Query: 167 RFNLHRKPRRAKAGGNLSGNVTQMHYARKGIITPEMEYIAIRENLRRQEYLEQLKASGPM 226
           RFNLHRKPRRAKAG N    VTQMHYAR+GIITPEME+IAIRENLRR+EYLEQLKASGPM
Sbjct: 121 RFNLHRKPRRAKAGAN----VTQMHYARRGIITPEMEFIAIRENLRRKEYLEQLKASGPM 176

Query: 227 GNKLADLMGRQHPGQSFGASIPAMITPEFVRDEVARGRAIIPANINHPEVEPMIIGRNFL 286
           GNKLADLMGRQHPGQSFGASIPA ITPEFVRDEVARGRAIIPANINHPEVEPMIIGRNFL
Sbjct: 177 GNKLADLMGRQHPGQSFGASIPAEITPEFVRDEVARGRAIIPANINHPEVEPMIIGRNFL 236

Query: 287 VKINANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGKNIHETREWIIRNSP 341
           VKINANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGKNIHETREWIIRNSP
Sbjct: 237 VKINANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGKNIHETREWIIRNSP 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,148,397
Number of extensions: 47371
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 281
Effective length of database: 1,207,925
Effective search space: 339426925
Effective search space used: 339426925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)