BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0087.p
         (278 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309764|ref|YP_003773856.1| 4-oxalocrotonate decarboxylase ...   451   e-128

>gi|300309764|ref|YP_003773856.1| 4-oxalocrotonate decarboxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score =  451 bits (1161), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 213/278 (76%), Positives = 242/278 (87%)

Query: 1   MSSQASRYAHQLLDARANARLLPLLSSSEPLSVDDAYEIARRIIDIRVAQGEHPIGRKIG 60
           MSSQA RYAHQLLDARA ++++P +S SEPLSV+DAYEIA  I +IRVAQGE PIGRKIG
Sbjct: 3   MSSQALRYAHQLLDARAQSKVIPRISESEPLSVEDAYEIAHNIRNIRVAQGEQPIGRKIG 62

Query: 61  FTVHKTWDKYGVTDDARIPIWAHIYDSTVRYAHDNHGKQCLRGALQPRIEPEIVFKLGQA 120
           F V K W++YG+ DDARIP WA +YD+TVR+A DNHG Q L GA+QPRIEPEIVFKLG+ 
Sbjct: 63  FVVRKNWERYGIIDDARIPTWAPMYDTTVRFAEDNHGLQSLTGAVQPRIEPEIVFKLGKT 122

Query: 121 PSPDATIDELAECIEWMAHGFEIVTCPFANWEFTVADSIAAFGLHGTLIIGEPHVLSSAT 180
           P+P+A+++ELA+C+EWMAHGFEIV CPF  WEFTVADSIAAFGLHGTLI+GEPHVLSSA+
Sbjct: 123 PAPNASLEELADCLEWMAHGFEIVVCPFPKWEFTVADSIAAFGLHGTLIVGEPHVLSSAS 182

Query: 181 RHNLPQILASASVSLSSSTDSTGRLRAAGFFNDEADSPLHALWHLHQLLKTQPKFTPLQA 240
           RH+LPQILASASVSLS ST+S   LRAAGF NDE DSPLHALWHLHQLL+ Q +F  LQA
Sbjct: 183 RHHLPQILASASVSLSCSTESASVLRAAGFCNDEMDSPLHALWHLHQLLQKQTRFRKLQA 242

Query: 241 GEIITTGTWTDAYPVEAGQTWITAFSGVALPGLTVSFV 278
           GEIITTGTWTDA P+E GQTW TAFSGV LPGLTVSFV
Sbjct: 243 GEIITTGTWTDACPIEPGQTWTTAFSGVTLPGLTVSFV 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 869,980
Number of extensions: 34525
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,222,130
Effective search space: 237093220
Effective search space used: 237093220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)