BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0085.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309762|ref|YP_003773854.1| Holliday junction DNA resolvase...   232   2e-62

>gi|300309762|ref|YP_003773854.1| Holliday junction DNA resolvase
           DNA-binding subunit [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score =  232 bits (591), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/136 (91%), Positives = 130/136 (95%)

Query: 1   MIGRLSGILLEKNPPQLLVDCNGVGYEVGVPMSTFYNLPGLGEKVVLLTHLAIREDAHVL 60
           MIGRLSGILLEK PP LLVDC GVGYEV VPMST+YNLP LGEKV LLTHLAIREDAH+L
Sbjct: 1   MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60

Query: 61  FGFGSAEERNTFKELIKISGVGARTALSILSGMSVSDLAQAVTLQEAGRLTKVPGIGKKT 120
           FGFG+AEERNTFKELIKISGVGARTALSILSGMSV+DLAQAVTLQEAGRLT+VPGIGKKT
Sbjct: 61  FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120

Query: 121 AERLLLELKGKLGADL 136
           AERLLLELKGKLGADL
Sbjct: 121 AERLLLELKGKLGADL 136


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 563,326
Number of extensions: 20504
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)