BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0084.p
         (303 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309761|ref|YP_003773853.1| hypothetical protein Hsero_0420...   397   e-112

>gi|300309761|ref|YP_003773853.1| hypothetical protein Hsero_0420
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score =  397 bits (1020), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/311 (73%), Positives = 260/311 (83%), Gaps = 9/311 (2%)

Query: 1   MAGSSFFALIDDIAGILDDVSAMTKVAAKKTAGVLGDDLALNAQQVSGVNADRELPVVWA 60
           MAGS+FFALIDDIA +LDDVS MTKVAAKKTAGVLGDDLALNAQQV+GV A+RELPVVWA
Sbjct: 1   MAGSAFFALIDDIATVLDDVSLMTKVAAKKTAGVLGDDLALNAQQVAGVRAERELPVVWA 60

Query: 61  VAVGSLKNKAILVPAALAISAFAPWAVTPLLMLGGAFLCFEGFEKLAHKYLPHEDEHHGE 120
           VA GSLKNKAILVPAALAISAF PWAVTPLLMLGGAFLCFEGFEKLAHKYLPH++EHH  
Sbjct: 61  VAKGSLKNKAILVPAALAISAFIPWAVTPLLMLGGAFLCFEGFEKLAHKYLPHDEEHHEV 120

Query: 121 AA-APEAMES---EQDKIKGAIRTDFILSAEIIAITLGTVADAPLQQQITVLIGIALIMT 176
           AA APE ++    EQ+KIK A+RTDFILSAEIIAITLGTVA A LQQQITVL+GIALIMT
Sbjct: 121 AARAPEDIDPLVYEQEKIKDAVRTDFILSAEIIAITLGTVAGASLQQQITVLVGIALIMT 180

Query: 177 VGVYGVVAGIVKLDDGGLYLLR--TGGAIGR---RIGRAILVAAPYMMKSLTVIGTVAMF 231
            GVYG+VAGIVKLDDGGLYL++  +  A GR    IGRA+L AAP MM+SL+VIGT+AMF
Sbjct: 181 AGVYGLVAGIVKLDDGGLYLVQHASASAWGRIKAGIGRAVLAAAPKMMRSLSVIGTIAMF 240

Query: 232 MVGGGILTHGFAPVHHWIADVSAPLAAVPAIGGLLSVLAPSALDAVFGVVAGGAVLLLVT 291
           MVGGGILTHG    HH I   +  +  V  IG +L  +AP+ L+A+FGVVAG  VL++V 
Sbjct: 241 MVGGGILTHGLPFAHHAIEAAAVAVEGVAVIGPVLGAIAPAVLNALFGVVAGAVVLVVVK 300

Query: 292 LMQRVLKVFKK 302
           L QRVL +F+K
Sbjct: 301 LAQRVLSLFRK 311


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 810,678
Number of extensions: 32540
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,217,395
Effective search space: 265392110
Effective search space used: 265392110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)