BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0081.p
         (508 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309756|ref|YP_003773848.1| bifunctional phosphoribosylamin...   949   0.0  

>gi|300309756|ref|YP_003773848.1| bifunctional
           phosphoribosylaminoimidazolecarboxamide
           formyltransferase/IMP cyclohydrolase transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 523

 Score =  949 bits (2452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/504 (92%), Positives = 483/504 (95%)

Query: 5   RHRQAAGRQWXSTGGTAKLLADNGVKVTEVADYTGFPEMLDGRVKTLHPKVHGGILARRD 64
           R   A G    STGGTAKLLADNGV VTEVADYTGFPEMLDGRVKTLHPKVHGGILARRD
Sbjct: 20  RALSAMGVNILSTGGTAKLLADNGVPVTEVADYTGFPEMLDGRVKTLHPKVHGGILARRD 79

Query: 65  FPEHVAALDKHGIPTIDMVVVNLYPFQQTIAKEECSLEDAIENIDIGGPAMLRSSAKNHK 124
           FPEHVAAL +HGIPTIDMVVVNLYPFQQT+AKEECSLEDAIENIDIGGPAMLRSSAKNHK
Sbjct: 80  FPEHVAALQQHGIPTIDMVVVNLYPFQQTVAKEECSLEDAIENIDIGGPAMLRSSAKNHK 139

Query: 125 DVVVICDPTDYAGVLADLQAGGDLPYEKRFALAKKVFAHTAQYDGAITNYFTSLGEDKQH 184
           DV+VICDPTDY GVLA+L++GGDLPYEKRFALAKKVFAHTAQYDGAITNYFTSLGEDKQH
Sbjct: 140 DVIVICDPTDYEGVLAELKSGGDLPYEKRFALAKKVFAHTAQYDGAITNYFTSLGEDKQH 199

Query: 185 ATRSAYPETLNLHFEKVQDMRYGENPHQSAAFYRDVRKIDGALASYTQLQGKELSFNNIA 244
           +TRSAYP TLNLHFEKVQDMRYGENPHQSAAFYRD++K+DGALA+YTQLQGKELSFNNIA
Sbjct: 200 STRSAYPSTLNLHFEKVQDMRYGENPHQSAAFYRDIKKVDGALANYTQLQGKELSFNNIA 259

Query: 245 DADAAWECVKTFDAADTTACVIIKHANPCGVAVGGNPLEAYSKALQTDPTSAFGGIIAFN 304
           DADAAWECVK+FD A   ACVIIKHANPCGVA+G NPLEAYSKALQTDPTSAFGGIIAFN
Sbjct: 260 DADAAWECVKSFDPATEAACVIIKHANPCGVAIGANPLEAYSKALQTDPTSAFGGIIAFN 319

Query: 305 RELDGAAAEAVAKQFVEVLIAPSFSAEAKKIFAAKQNVRLLEIPLGNGMNTHDFKRVGGG 364
           RE+D AAAEAVAKQF+EVLIAPSFSAEAK+IFAAKQNVRLLEIPLG G+N +DFKRVGGG
Sbjct: 320 REVDAAAAEAVAKQFLEVLIAPSFSAEAKQIFAAKQNVRLLEIPLGTGLNGYDFKRVGGG 379

Query: 365 LLVQSPDARNVLLADVKVVSKKQPTPQQLQDLMFAWRVAKFVKSNAIVFCGNGMTLGVGA 424
           LLVQSPDA+NVLLADVKVVSKKQPTPQQLQDLMFAWRVAKFVKSNAIVFCGNGMTLGVGA
Sbjct: 380 LLVQSPDAKNVLLADVKVVSKKQPTPQQLQDLMFAWRVAKFVKSNAIVFCGNGMTLGVGA 439

Query: 425 GQMSRIDSARIASIKAQNAGLTLAGSAVASDAFFPFRDGLDVVVDAGATSVIHPGGSMRD 484
           GQMSRIDSARIASIKAQNAGLTLAGSAVASDAFFPFRDGLDVVVDAGAT VIHPGGSMRD
Sbjct: 440 GQMSRIDSARIASIKAQNAGLTLAGSAVASDAFFPFRDGLDVVVDAGATCVIHPGGSMRD 499

Query: 485 QEVIDAANERDVVMLLTGTRHFRH 508
           QEVIDAANERDVVMLLTGTRHFRH
Sbjct: 500 QEVIDAANERDVVMLLTGTRHFRH 523


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,575,680
Number of extensions: 66517
Number of successful extensions: 208
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 419
Effective length of database: 1,198,455
Effective search space: 502152645
Effective search space used: 502152645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)