BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0072.p
         (414 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309748|ref|YP_003773840.1| tyrosyl-tRNA synthetase [Herbas...   790   0.0  

>gi|300309748|ref|YP_003773840.1| tyrosyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 453

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/416 (92%), Positives = 399/416 (95%), Gaps = 3/416 (0%)

Query: 1   MTAEQLTPQAP---LPLSDKVQEALAITKRGVDELLIESEFAQKLARAEKSGQPLRIKLG 57
           M A+Q TP A    +PLSDKV EALAITKRG+DELLIESEFAQKLARAE+SGQPLRIKLG
Sbjct: 38  MNADQSTPTAAPSKMPLSDKVLEALAITKRGIDELLIESEFAQKLARAEQSGQPLRIKLG 97

Query: 58  LDPTAPDLHLGHTVVLNKMRQLQDLGHNVIFLIGDFTSMIGDPSGRNATRPPLTREQIEV 117
           LDPTAPDLHLGHTVVLNKMRQLQ+LGH VIFLIGDFTSMIGDPSGRNATRPPL+REQIE+
Sbjct: 98  LDPTAPDLHLGHTVVLNKMRQLQNLGHQVIFLIGDFTSMIGDPSGRNATRPPLSREQIEI 157

Query: 118 NAKTYFAQASLVLDAAKTEIRYNSEWCDPLGSRGMIQLASRYTVARMMERDDFTKRFKEG 177
           NAKTYFAQASLVLD +KTEIRYNSEWCD LGSRGMIQLASRYTVARMMERDDFTKRFKEG
Sbjct: 158 NAKTYFAQASLVLDPSKTEIRYNSEWCDALGSRGMIQLASRYTVARMMERDDFTKRFKEG 217

Query: 178 TPISVHEFLYPLMQGYDSVALKSDLELGGTDQKFNLLVGRELQKDFGQEPQCILTMPLLE 237
           TPISVHEFLYPLMQGYDSVALKSDLELGGTDQKFNLLVGRELQKDFGQEPQCILTMPLLE
Sbjct: 218 TPISVHEFLYPLMQGYDSVALKSDLELGGTDQKFNLLVGRELQKDFGQEPQCILTMPLLE 277

Query: 238 GLDGVDKMSKSKNNYIGITEPANTMFAKVMSISDVMMWRYYELLSFRSIADIAGFKADVA 297
           GLDGV+KMSKSK NYIGITEPANTMFAKVMSISDVMMWRYY+LLSFRS+A+IAG+KA+V 
Sbjct: 278 GLDGVEKMSKSKGNYIGITEPANTMFAKVMSISDVMMWRYYDLLSFRSMAEIAGYKAEVD 337

Query: 298 AGKNPRDIKVALAQEIVTRFHSQQAAEDALADFVNRSKGGIPDDVPEVSLTGAPLGIGQL 357
           AGKNPRDIKVALAQEIV RFHSQQAAEDALADFVNRSKGGIPDD+PEVSLTGAPLGIGQL
Sbjct: 338 AGKNPRDIKVALAQEIVARFHSQQAAEDALADFVNRSKGGIPDDIPEVSLTGAPLGIGQL 397

Query: 358 LKQTNLCASTSEALRMVEQGGVRIDGTVISDKGLKVEAGVFVVQVGKRKFARVTLS 413
           LKQ NLCASTSEALRMVEQGGVRIDGTVISDKGLKVEAG  VVQVGKRKFARVTL+
Sbjct: 398 LKQANLCASTSEALRMVEQGGVRIDGTVISDKGLKVEAGQCVVQVGKRKFARVTLA 453


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,240,938
Number of extensions: 51337
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,203,190
Effective search space: 392239940
Effective search space used: 392239940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)