BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0071.p
         (295 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309747|ref|YP_003773839.1| membrane metalloendopeptidase [...   342   2e-95

>gi|300309747|ref|YP_003773839.1| membrane metalloendopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 506

 Score =  342 bits (878), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 175/254 (68%), Positives = 199/254 (78%), Gaps = 2/254 (0%)

Query: 1   MFPKDKFARAASLYRTTHLFCQEKFHGSSRKTKILSAGALFLGAFTIGAAGFAPAEPDTS 60
           MFP+DK   A+SL  +    C  K   SS KT+I+ A ALFL AFTIGAAGFAPAEPD  
Sbjct: 42  MFPQDKLKHASSLCFSVLQSCHHKVAASSPKTRIIGASALFLAAFTIGAAGFAPAEPDMK 101

Query: 61  DAPVHAIVKDLALPDLQQQIAQLADREEFYVNEEKVRSGDTLATLLTRLGVDDEAAANFI 120
           DAPV+ I K+LALPDLQ QI+ L ++ ++YVNEEKVRSGDTLATLL RLGVDD+ A  FI
Sbjct: 102 DAPVNPISKELALPDLQHQISALEEQSQYYVNEEKVRSGDTLATLLNRLGVDDDEAMAFI 161

Query: 121 KSDTLARAVMQLRAGKRVMARTSEDGELQQLTATLSDGRDGQAVNNLVIERSGDSFKAST 180
           KSDTLAR+VMQLRAGKRV+A+T ++GEL +L+ATL DG D  A  NLVI R      A  
Sbjct: 162 KSDTLARSVMQLRAGKRVVAQTDDNGELVKLSATLDDGSD--APKNLVISRHDGKLSAEA 219

Query: 181 APAVLERRVEMRSGQIRSSLFAATDNAQIPDSVATQLVDMFSTNINFASDLRRGDRFNVV 240
            PAVLERRVEMRSG I SSLFAATD  QIPD+VA QLVDMF+TNINFASDLRRGDRFNVV
Sbjct: 220 QPAVLERRVEMRSGVIFSSLFAATDAVQIPDAVAMQLVDMFATNINFASDLRRGDRFNVV 279

Query: 241 YETFYNNGEPVRTG 254
           YETF+ NG+ VRTG
Sbjct: 280 YETFWQNGDLVRTG 293


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 851,744
Number of extensions: 34192
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,217,395
Effective search space: 255652950
Effective search space used: 255652950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)