BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0070.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309747|ref|YP_003773839.1| membrane metalloendopeptidase [...   252   1e-68
gi|300309687|ref|YP_003773779.1| transmembrane metalloendopeptid...    68   4e-13
gi|300312264|ref|YP_003776356.1| NlpD precursor lipoprotein [Her...    55   3e-09

>gi|300309747|ref|YP_003773839.1| membrane metalloendopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 506

 Score =  252 bits (643), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 119/154 (77%), Positives = 132/154 (85%), Gaps = 1/154 (0%)

Query: 1   MRVHPILGIWKQHTGVDFAAPTGTPIHASGDGVVDFVGKQNGYGNIVVIKHWNNYSTAYG 60
           MR+HPILG WKQHTGVDFAAPTGTPIHA+ DGVVDFVGKQNGYGNIVVIKHW+ YSTAYG
Sbjct: 352 MRLHPILGKWKQHTGVDFAAPTGTPIHAAADGVVDFVGKQNGYGNIVVIKHWSGYSTAYG 411

Query: 61  HMSRFATGLRKGDKISQGEVIGFVGMTGWATGPHLHYEFRVSNVPRNPLSVDVPNAQPLS 120
           HMSRFA  ++KG K+SQ +VIGFVGMTGWATGPHLHYEFRV+N PRNPLSVDVPN Q L+
Sbjct: 412 HMSRFAPDIKKGMKVSQNDVIGFVGMTGWATGPHLHYEFRVNNQPRNPLSVDVPNNQALT 471

Query: 121 GGQLARFRAVSTDMNRRLSLLRPPGENGSVTLAS 154
           G QL RFR V+ DM  R+++LR PG    V LAS
Sbjct: 472 GPQLQRFRTVAADMQHRMAMLRVPGA-PDVKLAS 504


>gi|300309687|ref|YP_003773779.1| transmembrane metalloendopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 325

 Score = 67.8 bits (164), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 60/107 (56%), Gaps = 2/107 (1%)

Query: 2   RVHPILGIWKQHTGVDFAAPTGTPIHASGDGVVDFVGKQNGYGNIVVIKHWNNYSTAYGH 61
           R+ P  G    H G+DF AP GT I A+  GVV        +GN++ I H NN  T Y H
Sbjct: 197 RLDPFTGHNAFHEGLDFPAPVGTRIVAAAAGVVIASEYHYQFGNMLEIDHGNNIITRYAH 256

Query: 62  MSRFATGLRKGDKISQGEVIGFVGMTGWATGPHLHYEFRVSNVPRNP 108
            SR    ++ GD + +G+ +  VG TG +TG HLH+E R+  + ++P
Sbjct: 257 ASRLF--VKVGDIVKRGQHVADVGSTGRSTGAHLHFEVRIRGIAQDP 301


>gi|300312264|ref|YP_003776356.1| NlpD precursor lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 332

 Score = 54.7 bits (130), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 15  GVDFAAPTGTPIHASGDGVVDFVGKQ-NGYGNIVVIKHWNNYSTAYGHMSRFATGLRKGD 73
           GVD A   G  + A+G G V + G    GYGN+V+IKH +N  +AY H       +++G 
Sbjct: 234 GVDIAGKAGQAVLAAGAGKVMYAGSGIRGYGNLVIIKHTSNLLSAYAHNQTIL--VKEGQ 291

Query: 74  KISQGEVIGFVGMTGWATGPHLHYEFRVSNVPRNP 108
            +++G+ I  +G +   T   LH+E R    P +P
Sbjct: 292 SVTKGQKIAEMGKSDSDT-VKLHFEIRQQGKPVDP 325


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 578,123
Number of extensions: 24712
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 3
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)