BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0069.p
         (372 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309746|ref|YP_003773838.1| anhydro-N-acetylmuramic acid ki...   462   e-131

>gi|300309746|ref|YP_003773838.1| anhydro-N-acetylmuramic acid
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  462 bits (1189), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/373 (67%), Positives = 282/373 (75%), Gaps = 14/373 (3%)

Query: 1   MSGTSLDGVDGVLASLPDDGQPM-ATLATAYVPFPQDLRAALMALQANGENELQREALAA 59
           MSGTSLDGVDGVLA     GQ + ATLA AYVPFP  LRA LMALQA G NE++REA+AA
Sbjct: 15  MSGTSLDGVDGVLADF--QGQSVSATLAAAYVPFPPHLRADLMALQAAGPNEIEREAMAA 72

Query: 60  NQLANHYAQCVAQLLEKSAIPAAYIRAVGVHGQTIRHRPELGYTRQTNNPSLLAELCGID 119
           N LA HYA CVAQLL ++   AA IR VGVHGQTIRHRPELG+TRQTNN +LLAEL GID
Sbjct: 73  NALAVHYADCVAQLLLQTGKSAAAIRMVGVHGQTIRHRPELGFTRQTNNAALLAELSGID 132

Query: 120 VIADFRSRDVAAXHWWAGGQGAPLVPAFHQAVFGSDNDMRVAVNIGGISNISILPAGKQA 179
           ++ADFRSRDVA     AGGQGAPLVPAFH+A+FG     RV VNIGGI+NISILPAGK+ 
Sbjct: 133 IVADFRSRDVA-----AGGQGAPLVPAFHRALFGDAAQSRVVVNIGGIANISILPAGKEE 187

Query: 180 ATSGFDTGPGNVLMDAWIARHQGQSYDADGAWGASGKVNATLLAALRSDAYFALPPPKST 239
           A  GFDTGPGN LMD WI  HQ +SYD +G WGASG+V+  LL  LR +A+F  PPPKS+
Sbjct: 188 AY-GFDTGPGNALMDGWIHLHQQRSYDINGDWGASGQVHPGLLTQLREEAFFHAPPPKSS 246

Query: 240 GRDLFHIEWLEARLADF-PPLSPVDVQATLTAFTATTIADAIVAHAPAAAALYVCGGGAY 298
           GRDLFH++WL+A L      ++P DVQATL   TA TIADAI  HA  A  +YVCGGGA 
Sbjct: 247 GRDLFHLDWLQAALLRTGQQVAPADVQATLAMLTANTIADAIKLHAADAGQVYVCGGGAE 306

Query: 299 NGYLLELLAQALQTGAGRTIPVMSTEVLGVAPNHVEALAFAWLAQRFCLRLPGNLPAVTG 358
           N  L+ LL Q L+   GR   V ST  LGVAP HVEALAFAWLAQRF  RL GNLPAVTG
Sbjct: 307 NALLMRLLGQQLE---GRA-EVRSTAALGVAPQHVEALAFAWLAQRFDQRLAGNLPAVTG 362

Query: 359 ARGLRVLGGLYPA 371
           ARG RVLG LYPA
Sbjct: 363 ARGPRVLGALYPA 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,201,007
Number of extensions: 48477
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,207,925
Effective search space: 344258625
Effective search space used: 344258625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)