BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0068.p
         (151 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309745|ref|YP_003773837.1| hypothetical protein Hsero_0404...   123   6e-30

>gi|300309745|ref|YP_003773837.1| hypothetical protein Hsero_0404
           [Herbaspirillum seropedicae SmR1]
          Length = 156

 Score =  123 bits (309), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 87/154 (56%), Positives = 108/154 (70%), Gaps = 3/154 (1%)

Query: 1   MKHHYISLLVVGLSMLALLNGCAGGPD--YRSAPVGGNPPPAYSNANTGVIEDIEVSHQQ 58
           ++HHY SL +V LS   LL GCA      Y + P   N     S   TGV+E IEV+H++
Sbjct: 3   VRHHYASLAIVSLSFAGLLIGCASPQQQPYGAVPQSQNYDRVASYTGTGVVEAIEVTHKE 62

Query: 59  SNGVGGAVVGGVVGGLLGNQIGSGSGRTAATVAGAVGGGVVGNQVQKNHS-GREVYNIRV 117
           SNGV G VVGGV GGL+GN IG G+GR  ATVAGA GG   GN++Q+N+S GR+VYNIRV
Sbjct: 63  SNGVAGTVVGGVAGGLVGNAIGGGTGRVLATVAGAAGGAYAGNKIQRNNSEGRQVYNIRV 122

Query: 118 RMNDGSMQSFAQDSTDNLRAGDRVRVDGGRVYRY 151
           RM+DGSMQ+FAQ+   + R GDRVR+D GR+ RY
Sbjct: 123 RMDDGSMQTFAQEDNTDFRVGDRVRLDNGRISRY 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 270,928
Number of extensions: 6244
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 2
Length of query: 151
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 74
Effective length of database: 1,255,275
Effective search space: 92890350
Effective search space used: 92890350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)