BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0067.p
         (321 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309744|ref|YP_003773836.1| magnesium and cobalt transport ...   614   e-177

>gi|300309744|ref|YP_003773836.1| magnesium and cobalt transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 321

 Score =  614 bits (1583), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 302/321 (94%), Positives = 309/321 (96%)

Query: 1   MINVFVLQNGRLNQVNIDSRSDLETAAPVWVDLTEPTDDERAWVKSIYGVTLPDEDEFSD 60
           MINVFVLQNGRL+QVNIDSR+DLE AAPVWVDLTEP D+ERAWVKSIYGVTLPDEDEFSD
Sbjct: 1   MINVFVLQNGRLSQVNIDSRTDLEQAAPVWVDLTEPNDEERAWVKSIYGVTLPDEDEFSD 60

Query: 61  IEASARYFEAENGDLHLRTDFLFEGDDDTSATMTVAFILARNILFSMHAEDLPVFRLVRM 120
           IEASARYFEAENGDLHLRTDFLFEGDDD+S+TMTVAFILARNILFS+HAEDLPVFRLVRM
Sbjct: 61  IEASARYFEAENGDLHLRTDFLFEGDDDSSSTMTVAFILARNILFSVHAEDLPVFRLVRM 120

Query: 121 RARSRPGSIGDYRDVLLDLYETDAEYSADALEGIYQKLETVSHSVLKKSLSDQAAAEVLN 180
           RARSRPGSIGDYRDVLLDLYETDAEYSADALEGIYQKLE VS SVLKKSLSDQ AAEVLN
Sbjct: 121 RARSRPGSIGDYRDVLLDLYETDAEYSADALEGIYQKLEAVSTSVLKKSLSDQDAAEVLN 180

Query: 181 AIAHEEDLNGRIRRNMMDTRRAVSFLMRGRLLSSDQFEDARQILRDIESLDGHTAFLFDK 240
            IAHEEDLNGRIRRNMMDTRRAVSFLMRGRLLSS+QFEDARQILRDIESLDGHTAFLFDK
Sbjct: 181 TIAHEEDLNGRIRRNMMDTRRAVSFLMRGRLLSSEQFEDARQILRDIESLDGHTAFLFDK 240

Query: 241 INFLMDATVGFININQNKIIKIFSVASVAFLPPTLIASIYGMNFDWMPELHWAGGYPLAI 300
           INFLMDATVGFININQNKIIKIFSVASVAFLPPTLIASIYGMNF  MPEL WA GYPLAI
Sbjct: 241 INFLMDATVGFININQNKIIKIFSVASVAFLPPTLIASIYGMNFKIMPELDWAIGYPLAI 300

Query: 301 AMMIASAIAPFWYFRRRGWLN 321
            MMI SAIAPFWYFRRRGWLN
Sbjct: 301 LMMIGSAIAPFWYFRRRGWLN 321


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 897,861
Number of extensions: 33460
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 2
Length of query: 321
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 236
Effective length of database: 1,217,395
Effective search space: 287305220
Effective search space used: 287305220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)