BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0063.p
         (296 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309741|ref|YP_003773833.1| periplasmic protein TonB, links...   429   e-121

>gi|300309741|ref|YP_003773833.1| periplasmic protein TonB, links
           inner and outer membranes [Herbaspirillum seropedicae
           SmR1]
          Length = 307

 Score =  429 bits (1103), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 202/289 (69%), Positives = 249/289 (86%), Gaps = 2/289 (0%)

Query: 4   FAENRFLTIAIAGSVLVHAALLAVRFAAPDAFRLKPADPGLEVILVNAKHDKAPVKADAI 63
           FA++R L++A+  S+LVH  +LAV FAAPDAFRLKP+DP LEVILVNAKHDK PV A A+
Sbjct: 18  FAQHRLLSVALGVSLLVHGLMLAVHFAAPDAFRLKPSDPDLEVILVNAKHDKKPVNAQAL 77

Query: 64  AQANLDGGGNANQGRAKSPLPDMRKVETGDSVKAAQRKVAELEAQQQKILAQMNKNAPVV 123
           AQANLDGGGNA  GRAKSPLPDM++V++GDSVKAAQRKV ELE QQ++++AQ+ ++   V
Sbjct: 78  AQANLDGGGNAEDGRAKSPLPDMQRVDSGDSVKAAQRKVVELEQQQRRMMAQLKQSQQHV 137

Query: 124 ATPEREPHKEVQPQLNAKDLLDTAKAVARMEAEVAKNIEEYNKRPKKTQITARTREAGYA 183
           A+ E++   E  PQLNA+D+++TA+A+ARMEAEVA++IE+YNKRPKKTQIT  TRE GYA
Sbjct: 138 ASAEQQKQTEA-PQLNARDMIETARAMARMEAEVARDIEQYNKRPKKTQITPSTREVGYA 196

Query: 184 MYYKALQEKIEKIGTLNFPQRDGKKLYGELVIYIPVYQDGSIYDKEGGVRVERSSGNLAL 243
            YYK LQ+KIEK+GTLNFP +DGKKLYGEL+I IPV+QDGSIY+++GGV V+ SSGN AL
Sbjct: 197 QYYKTLQDKIEKVGTLNFPTKDGKKLYGELLIVIPVFQDGSIYERDGGVVVKSSSGNAAL 256

Query: 244 DAAALTIVRRSAPFGRFPDNMRTTGGKDDIWEVITRFRFTREETLQTDL 292
           D AA+ IVRRSAPFGRFPDNMR TGG+DD+WE+ITRFRFTR++ LQ  L
Sbjct: 257 DQAAVAIVRRSAPFGRFPDNMR-TGGRDDVWEIITRFRFTRDQGLQAQL 304


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 889,222
Number of extensions: 36052
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,217,395
Effective search space: 256870345
Effective search space used: 256870345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)