BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0061.p
         (215 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309739|ref|YP_003773831.1| 4-hydroxybenzoate synthetase [H...   162   2e-41

>gi|300309739|ref|YP_003773831.1| 4-hydroxybenzoate synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score =  162 bits (410), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/201 (52%), Positives = 122/201 (60%), Gaps = 17/201 (8%)

Query: 7   AHWFDHANALQPAPKKKKNPXAPQLRAWLTDPGSMTFKLRARCNELRVLRLRQRPGNAQA 66
           A W  H  AL      ++   A + RAWL+DPGSMT KL+AR     V  LRQRPG   A
Sbjct: 8   ARWMAHPQALA-GQLAEQGGVARRTRAWLSDPGSMTLKLKARTAHFTVRLLRQRPGPILA 66

Query: 67  DEAGFLGLATPRQPVEERDVILYCDGEPVIFGHTVTPLASA-SAWPFFRHLGVRPLGASL 125
           DE   LG+   R  V ERDVIL+CDG+PV+FGHTV   AS  S WPFF  LG  PLGA+L
Sbjct: 67  DEHAALGVPA-RSRVVERDVILHCDGQPVVFGHTVLSTASVKSDWPFFSKLGNTPLGANL 125

Query: 126 FSDPLVTRARARLHANHPLVRRXYARLHANHPLVRRIGTVIDLRSKLPPQLPLYARRSLF 185
           F DPLV R+        P+    YARL A+HPL+RRI   +     LP    L ARRSLF
Sbjct: 126 FFDPLVGRS--------PI---QYARLAADHPLMRRI---VQALPGLPLPPSLLARRSLF 171

Query: 186 RRHGSVMLVTDVFLPALSKLM 206
            R G V++VTDVFLPAL  LM
Sbjct: 172 TRRGGVLMVTDVFLPALEPLM 192


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 642,834
Number of extensions: 26152
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 134
Effective length of database: 1,236,335
Effective search space: 165668890
Effective search space used: 165668890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)