BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0057.p
         (177 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309732|ref|YP_003773824.1| thioredoxin-related transmembra...   241   2e-65

>gi|300309732|ref|YP_003773824.1| thioredoxin-related transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 173

 Score =  241 bits (616), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/175 (66%), Positives = 148/175 (84%), Gaps = 3/175 (1%)

Query: 1   MKK-RNYLLFVLIAIIAAGVGVYTSHKQNQPAPQTPEARAVANLFAQTMPDAAGKPQALS 59
           MKK RN +L  ++A++  G+G+Y SH+ + PA ++ E +A+  L AQ++PDA G+ Q+L+
Sbjct: 1   MKKLRNVILLAVVAVVCVGIGLYASHRAH-PA-ESAETQALNRLLAQSLPDATGQMQSLA 58

Query: 60  QWKGKPLIINFWATWCAPCVEEMPELAALQAEVAPVQIIGIGVDSQENIAQFAEKFHIYY 119
           Q++GKPLI+NFWATWC PCVEEMPEL ALQ E+APVQI+GIGVDSQENI +FA+K+ I Y
Sbjct: 59  QYRGKPLIVNFWATWCGPCVEEMPELTALQQEIAPVQILGIGVDSQENIGKFAQKYQIRY 118

Query: 120 PLYVAGTGATDLLRQFGNQAGGLPFTVLVGLDGNLKKVYLGRLNFDELRRDLASL 174
           PL+VAGTGATDLLRQFGNQAGGLPFT LVG DGN+KK+YLGRL FDELR+DL+ L
Sbjct: 119 PLFVAGTGATDLLRQFGNQAGGLPFTALVGKDGNVKKIYLGRLKFDELRQDLSQL 173


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 597,170
Number of extensions: 26420
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 98
Effective length of database: 1,245,805
Effective search space: 122088890
Effective search space used: 122088890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)