BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0050.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309725|ref|YP_003773817.1| bacterioferritin comigratory pr...   265   9e-73
gi|300311399|ref|YP_003775491.1| bacterioferritin comigratory ox...    67   8e-13
gi|300309486|ref|YP_003773578.1| antioxidant oxidoreductase [Her...    57   8e-10

>gi|300309725|ref|YP_003773817.1| bacterioferritin comigratory
           protein [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score =  265 bits (678), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 124/157 (78%), Positives = 143/157 (91%), Gaps = 1/157 (0%)

Query: 5   KAGDKAPDFTAQSSLGGQVSTFSLADALTKGPVVLYFYPAAFTTGCTIEAHLFADAIDRY 64
           K G+KAP+F+A +SLGGQVSTF+L++AL KGPVVLYFYPAAFT+GCTIEAHLFA+A+DRY
Sbjct: 39  KPGEKAPEFSAPASLGGQVSTFTLSEALKKGPVVLYFYPAAFTSGCTIEAHLFAEAVDRY 98

Query: 65  KALGATVIGVSNDKIETLNKFSVSACRSKFAVAADTDQKIMKAYDAVMMIKSDYASRTSY 124
           KALGATVIGVS D IETLNKFSVS CRSKFAVAAD D+KIMKAYDA  +  + YASRTSY
Sbjct: 99  KALGATVIGVSGDNIETLNKFSVSECRSKFAVAADVDKKIMKAYDAQFLKVTGYASRTSY 158

Query: 125 VITPDHAILYEYSSMNPDKHVENTLQALQQW-AAKKR 160
           VITPDHAILYEY+ MNP+KHVENT+QAL++W AA+KR
Sbjct: 159 VITPDHAILYEYTDMNPEKHVENTMQALEKWSAAQKR 195


>gi|300311399|ref|YP_003775491.1| bacterioferritin comigratory
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score = 66.6 bits (161), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 11  PDFTAQSSLGGQVSTFSLADALTKGPVVLYFYPAAFTTGCTIEAHLFADAIDRYKALGAT 70
           PDF+A  + G    TF LAD   K  +VLYFYP   T GCT E   F D   +++A    
Sbjct: 13  PDFSAAMTSG---KTFQLADYQGKN-LVLYFYPKDNTPGCTTEGMQFRDLHAQFQAANTE 68

Query: 71  VIGVSNDKIETLNKFSVSACRSKFAVAADTDQKIMKAYDAVMMIKSDYA------SRTSY 124
           + GVS D +++   F  +     F + +D D+ +   +D VM +K+ Y        R+++
Sbjct: 69  IFGVSRDSLKSHENFK-AKLGMPFELISDPDETLCTMFD-VMKMKNMYGKQVRGVERSTF 126

Query: 125 VITPDHAILYEYSSMNPDKHVENTLQALQQWA 156
           VI     ++ E+  +    HV+  L  +Q  A
Sbjct: 127 VIDGAGKVVKEWRGVKVPAHVDEVLAFIQTLA 158


>gi|300309486|ref|YP_003773578.1| antioxidant oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score = 57.0 bits (136), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 14/160 (8%)

Query: 4   LKAGDKAPDFTAQSSLGGQVSTFSLADALTKGPVVLYFYPAAFTTGCTIEAHLFADAIDR 63
           L+ GD APDF  +SS+G         D      VVL+ +PA FT  CT E  L A     
Sbjct: 3   LRLGDTAPDFEQESSIG----KIKFHDWAGDSWVVLFSHPADFTPVCTTELGLTAKLKPE 58

Query: 64  YKALGATVIGVSNDKIETLNKFSVSACRSK-----FAVAADTDQKIMKAYDAVMMIKSDY 118
           +       I +S D  E  N++      ++     F + AD D+K+   YD +   +S+ 
Sbjct: 59  FDKRNVKAIALSVDGAEAHNQWIKDIEETQQTVVGFPIVADVDKKVAGLYDMIHPNQSET 118

Query: 119 AS-RTSYVITPDHA----ILYEYSSMNPDKHVENTLQALQ 153
           A+ R+ ++I P       I Y  S+      V   + ALQ
Sbjct: 119 ATVRSLFIIDPKKKVRLIITYPMSTGRNFDEVLRVIDALQ 158


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.128    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 444,631
Number of extensions: 14788
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 3
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)