BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0047.p
         (396 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309722|ref|YP_003773814.1| transmembrane ribonucleoside re...   728   0.0  

>gi|300309722|ref|YP_003773814.1| transmembrane ribonucleoside
           reductase small subunit [Herbaspirillum seropedicae
           SmR1]
          Length = 388

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/397 (89%), Positives = 363/397 (91%), Gaps = 10/397 (2%)

Query: 1   MLSWDDEVKA-TPAPSAPHASQTPQPQLQSAAVNARPQFSDVALNPALVTKDEAPVDVTR 59
           MLSWDDE K    AP  P+     QPQLQ A        S+ ALNPAL+  +   VD TR
Sbjct: 1   MLSWDDEAKQPAQAPRTPNL----QPQLQPAFGQ-----SNAALNPALMAGNSEQVDTTR 51

Query: 60  RVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKDPNGLT 119
           RVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWK+PNGLT
Sbjct: 52  RVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGLT 111

Query: 120 EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 179
           EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 112 EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 171

Query: 180 ESLGLDEAEIFNAYHEVKSIRDKDEFLIPFINTLTDPQFTTGTTENDQKLLKSLIVFACI 239
           ESLGLDEAEIFNAYHEV SIRDKDEFLIPFI+TLTDP+F TGT ENDQKLLKSLIVFACI
Sbjct: 172 ESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVFACI 231

Query: 240 MEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLWTP 299
           MEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLWTP
Sbjct: 232 MEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLWTP 291

Query: 300 EFRNEIKSLFLSAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLDPLFAQ 359
           EFR EIKSLFL AVELEYRYAEDTMPRGVLGLNAPMFK YLRFIANRRAQQIGLDPLFAQ
Sbjct: 292 EFREEIKSLFLRAVELEYRYAEDTMPRGVLGLNAPMFKSYLRFIANRRAQQIGLDPLFAQ 351

Query: 360 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 396
           EENPFPWMSEMIDLKKERNFFETRVIEYQTGGAL+WE
Sbjct: 352 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 388


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,220,183
Number of extensions: 48645
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,207,925
Effective search space: 373248825
Effective search space used: 373248825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)