BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0045.p
         (329 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large ...   535   e-153

>gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 994

 Score =  535 bits (1379), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 247/260 (95%), Positives = 255/260 (98%)

Query: 1   MNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKFGKAFEEAYTGYEAKAARGELKLFK 60
           MNTANWIPDLFMKRVMEKGEWTLFSPSD PDLHDKFG+AFEEAYT YEAKAARGELKLFK
Sbjct: 484 MNTANWIPDLFMKRVMEKGEWTLFSPSDTPDLHDKFGRAFEEAYTAYEAKAARGELKLFK 543

Query: 61  KIAALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIA 120
           K+ A DLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTN+SEIA
Sbjct: 544 KVQANDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIA 603

Query: 121 VCNLGSVNMPAHLVNGEIDHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGL 180
           VCNLGSVN+PAHLVNGE+DHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRPVG+
Sbjct: 604 VCNLGSVNLPAHLVNGELDHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGM 663

Query: 181 GIMGFQDCLHMKRVPYASMDAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDR 240
           GIMGFQDCLH+KRVPYASMDAVEFADRSMEAVCYYAY ASTELAEERGRY+SYRGSLWDR
Sbjct: 664 GIMGFQDCLHIKRVPYASMDAVEFADRSMEAVCYYAYMASTELAEERGRYASYRGSLWDR 723

Query: 241 GILPQDSLKLLAQERGGYLE 260
           GILPQDSLKLLAQERGGYLE
Sbjct: 724 GILPQDSLKLLAQERGGYLE 743


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,043,297
Number of extensions: 41512
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,212,660
Effective search space: 294676380
Effective search space used: 294676380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)