BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0044.p
         (458 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large ...   810   0.0  

>gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 994

 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/458 (86%), Positives = 424/458 (92%), Gaps = 3/458 (0%)

Query: 1   VRSTQEISAKSPTDFGVIPTAGNHDETTSSQLIKPASGLGEYRIIRRNGAVVGFEPSKIS 60
           +RSTQEIS KSP  +GV  +A       S  +    +GLGEYRIIRRNGAVVGFEPSKIS
Sbjct: 1   MRSTQEISVKSPAAYGV--SAELEGSAESQAVASQTAGLGEYRIIRRNGAVVGFEPSKIS 58

Query: 61  IAVTKAFLAVNGGQGAASARVREMVEQLTTSVVSALVRRQPTGGTFHIEDIQDQVELALM 120
           IAVTKAFLAVNGGQGAASARVREMVEQLTT+VVSALVRRQPTGGTFHIEDIQDQVELALM
Sbjct: 59  IAVTKAFLAVNGGQGAASARVREMVEQLTTNVVSALVRRQPTGGTFHIEDIQDQVELALM 118

Query: 121 RSGEHDVARAYVLYRAKRMEERAQQQGSAAKTDFAAPQLHVVEDGQSRLLDLDEVRTLIT 180
           RSGEHDVARAYVLYRAKRMEERAQQ G+A KT+  APQLHV EDGQSR LD++EVR+LI 
Sbjct: 119 RSGEHDVARAYVLYRAKRMEERAQQ-GAATKTEVVAPQLHVTEDGQSRPLDINEVRSLIA 177

Query: 181 AACVGLEKHVDADAILAETVKNLYDGVPVEELHKSAILAARALMEKDPAYSQVTARLLMH 240
           AACVGLE+HVD +AILAETVKNLYDGVPVEEL+KSAILAARALMEKDPAYSQVT+RLLMH
Sbjct: 178 AACVGLEEHVDGEAILAETVKNLYDGVPVEELYKSAILAARALMEKDPAYSQVTSRLLMH 237

Query: 241 TIRKEVFGKEVAQADAPAEYLDYFAKYIKKGIAADLLDSKLAQFDLVKLAEAIKPERDLQ 300
           TIRKEVFGKEVAQADAPAEYL+YF +Y+KKGI A+LLD+KLAQFDL KLA A+KPERDLQ
Sbjct: 238 TIRKEVFGKEVAQADAPAEYLEYFPQYVKKGIEAELLDTKLAQFDLAKLAAALKPERDLQ 297

Query: 301 FGYLGLQTLYDRYFLHIQGTRIEMPQAFYMRVAMGLSLNEINREERTIEFYNLLSSFDFM 360
           FGY+GLQTLYDRYFLHI GTRIEMPQAFYMRVAMGL+LNEI+RE R IEFY+LLSSFDFM
Sbjct: 298 FGYIGLQTLYDRYFLHIGGTRIEMPQAFYMRVAMGLALNEIDRETRAIEFYDLLSSFDFM 357

Query: 361 SSTPTLFNSGTLRSQLSSCYLTTVADDLDGIYEAIKENALLAKYAGGLGNDWTPVRSLGA 420
           SSTPTLFNSGT RSQLSSCYLTTVADDLDGIYEAIKENALLAK+AGGLGNDWTPVR+LGA
Sbjct: 358 SSTPTLFNSGTQRSQLSSCYLTTVADDLDGIYEAIKENALLAKFAGGLGNDWTPVRALGA 417

Query: 421 HIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 458
           HIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA
Sbjct: 418 HIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 455


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,355,615
Number of extensions: 55771
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 370
Effective length of database: 1,203,190
Effective search space: 445180300
Effective search space used: 445180300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)