BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0040.p (265 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 489 e-140 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 222 2e-59 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 218 3e-58 gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate A... 213 9e-57 gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate A... 207 6e-55 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 489 bits (1260), Expect = e-140, Method: Compositional matrix adjust. Identities = 236/264 (89%), Positives = 251/264 (95%) Query: 2 SASQIVVTGVNKVFKSDEREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALP 61 ++ +I + GV+KVFK+D+REVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALP Sbjct: 6 ASPRIRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALP 65 Query: 62 SSGNITTDGKLVTEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGVGKAEIQARVTQLL 121 SSG I TD K+V+EPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKG KAEI RVTQLL Sbjct: 66 SSGQILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLL 125 Query: 122 DKLGLIDFRSRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLR 181 DKLGLIDFR+RFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLR Sbjct: 126 DKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLR 185 Query: 182 IWDEFKKTIVFVTHSIEEAIYLADRIVVMTYRPGTIKRDITVTLPRLRDPADPEFNALKR 241 IWDEF+KTIVFVTHSIEEAIYLADRIVVMTYRPGT+KRD+ V LPRLRDPADPEFNALKR Sbjct: 186 IWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPEFNALKR 245 Query: 242 ELGQLVMEEQQRHHHDEMRAAAVD 265 ELGQLVMEEQQRHH+ EM+AAAVD Sbjct: 246 ELGQLVMEEQQRHHNAEMKAAAVD 269 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 222 bits (566), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 126/217 (58%), Positives = 148/217 (68%), Gaps = 3/217 (1%) Query: 25 LKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGNITTDGKLVTEPGPDRGMVF 84 + I+LDI G+FVCLLGPSGCGKSTLLNAIAGF SG I+ DGK V PG DRG+VF Sbjct: 22 MAGIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQ-DVSGEISVDGKRVKGPGLDRGVVF 80 Query: 85 QEY-ALFPWMTVEQNVAFGLEIKGVGKAEIQARVTQLLDKLGLIDFRSRFPKDLSGGMRQ 143 Q ALFPW++V +NV +GL+++GV AE +A + + +GL +FP +LSGGMRQ Sbjct: 81 QSSEALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLVGLKHAIDKFPAELSGGMRQ 140 Query: 144 RVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFKKTIVFVTHSIEEAIYL 203 R IARVL + ++LMDEPFGALDA TR LQ EL RIW TIVFVTH I EAI L Sbjct: 141 RAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAILL 200 Query: 204 ADRIVVMTYRP-GTIKRDITVTLPRLRDPADPEFNAL 239 ADR+V MT P IK V LP RDPADP AL Sbjct: 201 ADRVVTMTAGPRAHIKTIEEVHLPHPRDPADPACMAL 237 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 218 bits (556), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 116/243 (47%), Positives = 157/243 (64%), Gaps = 3/243 (1%) Query: 18 DEREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGNITTDGKLVTEPG 77 D++ V AL ++LDIP+G FV LG SGCGKSTLLNA+AGF S G I+ DG+ V+ PG Sbjct: 15 DKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSGPG 74 Query: 78 PDRGMVFQEYALFPWMTVEQNVAFGLEIKGVGKAEIQARVTQLLDKLGLIDFRSRFPKDL 137 +RG+VFQ+ +L PW +V+ NVA GL+ GV K++ + R +LL +GL DF P +L Sbjct: 75 AERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAAPYEL 134 Query: 138 SGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFKKTIVFVTHSI 197 SGGMRQRV +AR LA + I+LMDEPFGALD++TR +Q+ L+ +W K + F+THSI Sbjct: 135 SGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSI 194 Query: 198 EEAIYLADRIVVMTYRPGTIKRDITVTLPRLRDPADPEFNALKRELGQLVMEEQQRH--H 255 EEA++L ++VM+ RPG I R R A E A+K E + E+ R H Sbjct: 195 EEALFLGTEVIVMSPRPGRIVARFETDFVR-RFAAGCEARAIKTEPAFAELREEIRAIVH 253 Query: 256 HDE 258 E Sbjct: 254 QSE 256 >gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 213 bits (543), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 107/215 (49%), Positives = 145/215 (67%), Gaps = 4/215 (1%) Query: 15 FKSDEREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGNITTDGKLVT 74 +K+ + V A + ++ ++ G LLGPSGCGKSTLL AI G+ P+SG I G+ V Sbjct: 27 YKTTDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTSGAIRLKGREVH 86 Query: 75 EPGPDRGMVFQEY-ALFPWMTVEQNVAFGLEIKG--VGKAEIQARVTQLLDKLGLIDFRS 131 EPGPDR MVFQE+ L PW TV QNV F L G G+A + R + K+GL F Sbjct: 87 EPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLQGRAAAE-RAEYYISKVGLAKFID 145 Query: 132 RFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFKKTIV 191 +P LSGGM+QRV+IAR +A++ ++LMDEPF ALDALTRR +QDELLR+WD+ + T++ Sbjct: 146 SYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELLRLWDDTQFTVL 205 Query: 192 FVTHSIEEAIYLADRIVVMTYRPGTIKRDITVTLP 226 FVTHSIEEAI + RI+++T PG ++ ++ P Sbjct: 206 FVTHSIEEAIRVGTRILLLTPHPGQVRAELNSIDP 240 >gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 290 Score = 207 bits (528), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 105/224 (46%), Positives = 150/224 (66%), Gaps = 2/224 (0%) Query: 1 MSASQIVVTGVNKVFKSDEREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFAL 60 + A + V V+ ++S V A +++ D+ LLGPSGCGKS+LL ++AGF Sbjct: 16 LPAPLLQVDRVSLQYRSATAVVQATHEVSFDVYPADRFVLLGPSGCGKSSLLKSVAGFLP 75 Query: 61 PSSGNITTDGKLVTEPGPDRGMVFQEY-ALFPWMTVEQNVAFGL-EIKGVGKAEIQARVT 118 P++G I DG+++ +PGPDR +VFQE+ L PW TV QNV F L + +GK + R Sbjct: 76 PAAGEIRLDGQVLHQPGPDRIVVFQEFDQLPPWKTVLQNVMFPLLASRTLGKRDAAERAR 135 Query: 119 QLLDKLGLIDFRSRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDE 178 LDK+GL F +P LSGGM+ RVAIAR LA+ ++LMDEPF ALDALTRR +Q+E Sbjct: 136 HYLDKVGLARFADAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEE 195 Query: 179 LLRIWDEFKKTIVFVTHSIEEAIYLADRIVVMTYRPGTIKRDIT 222 LL +WDE + T++FVTHSIEEA+ + +RI++++ PG ++ +I Sbjct: 196 LLALWDEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEIN 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 831,020 Number of extensions: 34812 Number of successful extensions: 489 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 305 Number of HSP's successfully gapped: 135 Length of query: 265 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 181 Effective length of database: 1,222,130 Effective search space: 221205530 Effective search space used: 221205530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)