BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0037.p (215 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309715|ref|YP_003773807.1| nitrate/sulfonate/bicarbonate A... 355 2e-99 gi|300312620|ref|YP_003776712.1| ABC transporter periplasmic pro... 65 3e-12 gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate A... 63 2e-11 gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate A... 63 2e-11 gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte... 61 6e-11 >gi|300309715|ref|YP_003773807.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 355 bits (911), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 176/185 (95%), Positives = 181/185 (97%) Query: 18 ASSSAGAQEVIRLGNLKFAHYGAVSYIKEIAPKCGIKVDEKVFAKGPDVMQGILAGELDV 77 +++S A +VIRLGNLKFAHYGAVSYIKEIAPKCGIKVDEKVFAKGPDVMQGILAGELDV Sbjct: 17 SAASHAADDVIRLGNLKFAHYGAVSYIKEIAPKCGIKVDEKVFAKGPDVMQGILAGELDV 76 Query: 78 GTTASEAAISGRANGAPIYVVAGFAKGGARLVAAKDSGIKSVKDLKGKKVGVTRGGIHEV 137 GTTASEAAISGRANGAPIYVVAGFAKGGARLVA KDSGIKSVKDLKGKKVGVTRGGIHEV Sbjct: 77 GTTASEAAISGRANGAPIYVVAGFAKGGARLVAGKDSGIKSVKDLKGKKVGVTRGGIHEV 136 Query: 138 LLDAELGQNGLTAKDVTIVYLAFADLNQALLGKNIDAMMQSEPQSSQAINKGFGVEVMKP 197 LLDAELGQNGL+AKDVTIVYLAFADLNQALLGKNIDAMMQSEPQSSQAINKGFGVEVMKP Sbjct: 137 LLDAELGQNGLSAKDVTIVYLAFADLNQALLGKNIDAMMQSEPQSSQAINKGFGVEVMKP 196 Query: 198 YDTPI 202 YDTPI Sbjct: 197 YDTPI 201 >gi|300312620|ref|YP_003776712.1| ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 333 Score = 65.5 bits (158), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 4/168 (2%) Query: 19 SSSAGAQEVIRLGNLKFAH--YGAVSYIKEIAPKCGIKVDEKVFAKGPDVMQGILAGELD 76 S +A A E ++G L+ +Y + K G+ V+ F G D+++ I+ G+LD Sbjct: 19 SGNAFALEKFKIGYLRVMDDAQAMAAYEAGLYKKYGLDVELIEFKSGTDLVKAIVGGQLD 78 Query: 77 VGTTASEAAISGRANGAPIYVVAGFAKGGARLVAAKDSGIKSVKDLKGKKVGVTRGG--I 134 G A++ + GA + VV G G LVA +DSGI V DLKGK + G Sbjct: 79 SGVFGFSNAVAWASKGADLKVVGGAQLGYHALVAREDSGINKVADLKGKTLASQAEGSTA 138 Query: 135 HEVLLDAELGQNGLTAKDVTIVYLAFADLNQALLGKNIDAMMQSEPQS 182 VL L G+ A DV ++ ++ Q+L+GK +DA EPQ+ Sbjct: 139 DTVLKGVVLRDAGIKADDVNVMGVSPQVAVQSLVGKRVDAAFLFEPQA 186 >gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 323 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 92/181 (50%), Gaps = 16/181 (8%) Query: 14 MAAGASSS------AGAQEVIRLGNLKFAHY----GAVSYIKEIAPKCGIKVDEKVFAKG 63 +AAGA +S A A +V+R+G KF G+ + + P+ G V FA G Sbjct: 17 LAAGALASGTPLVRAAADKVLRIGYQKFNTLNILKGSGKLEQALQPQ-GWSVKWFEFAAG 75 Query: 64 PDVMQGILAGELDVGTTASEAAISGRANGA-PIYVVAG--FAKGGARLVAAKDSGIKSVK 120 P + + + A +D+G A ++ A+G +Y+ A + KG VA ++S I+SV Sbjct: 76 PQLTEALNANAIDLGHAADTPSVFANASGVNAVYLGAEQPYPKGIGIFVA-QESPIRSVA 134 Query: 121 DLKGKKVGVTRGGIHEVLLDAELGQNGLTAKDVTIVYLAF-ADLNQALLGKNIDAMMQSE 179 DLKGKKV RG + LL L + GL+ +D+ VY+ AD+ A N+DA + Sbjct: 135 DLKGKKVATGRGWNVQFLLLKALEEVGLSYRDIEPVYVTNAADVRAAFQSGNVDAATLWD 194 Query: 180 P 180 P Sbjct: 195 P 195 >gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 97/183 (53%), Gaps = 20/183 (10%) Query: 1 MHKK---LIAAAAVAIMAAGA----SSSAGAQEVIRLGNLKFAHYGAVS-------YIKE 46 MH++ +A AA+ + A G SS+A +VIRL +A+Y S +++E Sbjct: 1 MHRRDFLRLAPAALGVTALGGIPLLSSAAQPPKVIRLD---YAYYSPPSLVLRKFGWLEE 57 Query: 47 IAPKCGIKVDEKVFAKGPD-VMQGILAGELDVGTTASEAAISGRANGAPIYVVAGFAKG- 104 G +V + V ++G + ++ + + +D G+TA AA+ RANG P+ V +++ Sbjct: 58 DLKAQGTEV-KWVLSQGSNRALEYLNSDSVDFGSTAGLAALLARANGNPVKAVYIYSRPE 116 Query: 105 GARLVAAKDSGIKSVKDLKGKKVGVTRGGIHEVLLDAELGQNGLTAKDVTIVYLAFADLN 164 L K+S +KS+ +LKGKK+ T+G + L L +NGL DV IV+L AD Sbjct: 117 WTALAVGKESPVKSINELKGKKIAATKGTDPYLFLLRALHENGLKKSDVEIVHLQHADGR 176 Query: 165 QAL 167 AL Sbjct: 177 AAL 179 >gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 61.2 bits (147), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 90/189 (47%), Gaps = 14/189 (7%) Query: 3 KKLIAAAAVAIMAAGASSSAGAQE--VIRLGNLKFAH-------YGAVSYIKEIAPKCGI 53 ++L A A A+ A +S AQE ++R+G K A+ +G + K + P G+ Sbjct: 18 QRLSAIALGALTIALGASPVQAQETKLLRIGYQKAANTLVLLKAHGTLE--KRLQP-LGV 74 Query: 54 KVDEKVFAKGPDVMQGILAGELDVGTTASEAAISGRANGAP-IYVVAGFAKGGAR-LVAA 111 +V FA GP +++ + G +D G + +A GA +Y A L+ Sbjct: 75 EVKWAEFAAGPQLLEALNVGSVDFGYVGEAPPVFAQAAGADFVYTAYEIPTPDAEGLLVQ 134 Query: 112 KDSGIKSVKDLKGKKVGVTRGGIHEVLLDAELGQNGLTAKDVTIVYLAFADLNQALLGKN 171 K+S IKSV +LKGKK+ +G L+ A L + GL D+ VYLA AD A Sbjct: 135 KNSPIKSVAELKGKKIAFNKGSDVHWLVVALLKKAGLQYSDIQPVYLAPADARAAFERGA 194 Query: 172 IDAMMQSEP 180 +DA +P Sbjct: 195 VDAWAIWDP 203 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.132 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 584,118 Number of extensions: 24071 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 9 Length of query: 215 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 134 Effective length of database: 1,236,335 Effective search space: 165668890 Effective search space used: 165668890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)