BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0036.p
         (376 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309714|ref|YP_003773806.1| signal recognition particle sub...   492   e-140
gi|300313432|ref|YP_003777524.1| signal recognition particle GTP...   101   1e-22

>gi|300309714|ref|YP_003773806.1| signal recognition particle
           subunit SRP54 protein [Herbaspirillum seropedicae SmR1]
          Length = 456

 Score =  492 bits (1267), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 243/261 (93%), Positives = 255/261 (97%)

Query: 1   MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKERSV 60
           MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKE+++
Sbjct: 1   MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKAL 60

Query: 61  GEEVIGSLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 120
           GEEVIGSLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT
Sbjct: 61  GEEVIGSLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 120

Query: 121 VGKLAKYLRENTRKKVLTVSADVYRPAAIGQLETVTAQAGADFFPTKTTDKPVDIALAAL 180
           VGKLAKYLRE T+KKVLTVSADVYRPAAIGQLETVT QAGADFFP++ TDKPVDIALAAL
Sbjct: 121 VGKLAKYLRETTKKKVLTVSADVYRPAAIGQLETVTGQAGADFFPSQATDKPVDIALAAL 180

Query: 181 DYAKRHFHDVLIIDTAGRLGIDEAMMQEISAVHAAVKPIETLFVVDAMLGQDAINTAKAF 240
           DYAK+H H+VLI+DTAGRLGID+AMM EI AVHAA+KPIETLFVVDAMLGQDAINTAKAF
Sbjct: 181 DYAKKHHHEVLIVDTAGRLGIDQAMMDEIRAVHAAIKPIETLFVVDAMLGQDAINTAKAF 240

Query: 241 SDALPLTGIVLTKLDGDSRGG 261
           SDALPLTG+VLTKLDGDSRGG
Sbjct: 241 SDALPLTGVVLTKLDGDSRGG 261


>gi|300313432|ref|YP_003777524.1| signal recognition particle GTPase
           involved in cell division protein [Herbaspirillum
           seropedicae SmR1]
          Length = 321

 Score =  101 bits (251), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 20/241 (8%)

Query: 29  EMLREVRLALLEADVALPAVREFIAKVKERSVGEEVIGSLTPGQALVGVVQRELASLMGA 88
           ++  E+  ALL +D  + A +  + ++K++   E +  +          V+  L +L+  
Sbjct: 54  DLYEELESALLVSDAGVEATQWLLDELKKKVKAERLTEA--------AQVRTALRTLLIE 105

Query: 89  DLGPEASQLNFATQPPAIILMAGLQGAGKTTTVGKLAKYLRENTRKKVLTVSADVYRPAA 148
            L P    L      P ++++AG+ GAGKTTT+GKLA +L+ +  + VL  + D +R AA
Sbjct: 106 LLQPLQRPLVLGRDKPLVMMIAGVNGAGKTTTIGKLALHLQAHG-QSVLLAAGDTFRAAA 164

Query: 149 IGQLETVTAQAGADFFPTKTTDKPVDIALAALDYAKRHFHDVLIIDTAGRLGIDEAMMQE 208
             QL     +        ++ D P  +A  ++  A+     V+++DTAGRL     +M E
Sbjct: 165 REQLAVWGERNNVQVIAQESGD-PAAVAYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDE 223

Query: 209 IS--------AVHAAVKPIETLFVVDAMLGQDAINTAKAFSDALPLTGIVLTKLDGDSRG 260
           +         A+H+A  P E L V+D   GQ+A+   KAF DAL LTG+V+TKLDG ++G
Sbjct: 224 LKKIKRVIGKAMHSA--PHEVLLVIDGNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKG 281

Query: 261 G 261
           G
Sbjct: 282 G 282


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,073,729
Number of extensions: 43221
Number of successful extensions: 254
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 289
Effective length of database: 1,207,925
Effective search space: 349090325
Effective search space used: 349090325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)