BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0033.p
         (141 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309712|ref|YP_003773804.1| hypothetical protein Hsero_0371...   117   4e-28

>gi|300309712|ref|YP_003773804.1| hypothetical protein Hsero_0371
           [Herbaspirillum seropedicae SmR1]
          Length = 137

 Score =  117 bits (293), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/132 (47%), Positives = 86/132 (65%), Gaps = 3/132 (2%)

Query: 10  RTGLRNTAAALSIAAAGLLATTCAFAAGKSNAELDAQYQREKAVCTSGQSNQDKATCLRE 69
           R  L  +A+AL I  A L   +   AAGK++   ++ YQ++ A C +G S++D+ATCLRE
Sbjct: 9   RHQLLRSASALVIGLAALGGASHVLAAGKTD---NSDYQQQVAACKNGSSSEDRATCLRE 65

Query: 70  AGAAYQQARQGRLNDGQQAQYSSNALERCKALPAGDQADCQRRIENPSDVEGSVPSGGIL 129
           AGAA Q A +G L D   AQ   NA++RC+ LP  D+ DC++R+     VEGSV  GGIL
Sbjct: 66  AGAARQAASRGNLTDPGAAQLKENAMKRCEGLPQSDRIDCEKRVNGEGRVEGSVSEGGIL 125

Query: 130 RKDVTIVPATTQ 141
           R+ VTIVPAT +
Sbjct: 126 RETVTIVPATAK 137


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.124    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 340,697
Number of extensions: 9877
Number of successful extensions: 21
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 65
Effective length of database: 1,260,010
Effective search space: 81900650
Effective search space used: 81900650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)