BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0030.p
         (261 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309711|ref|YP_003773803.1| prolyl-tRNA synthetase [Herbasp...   406   e-114

>gi|300309711|ref|YP_003773803.1| prolyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 575

 Score =  406 bits (1043), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 190/203 (93%), Positives = 201/203 (99%)

Query: 1   MPMGLKVIRKVEAIVREEMNRSGAIELLMPVVQPAELWQETGRWDKMGAELMRVKDRHGR 60
           MPMGL+VIRKVEAIVREEMNR+GA+ELLMPVVQPAELWQETGRW+KMGAELMRVKDRHGR
Sbjct: 43  MPMGLRVIRKVEAIVREEMNRAGAVELLMPVVQPAELWQETGRWNKMGAELMRVKDRHGR 102

Query: 61  DFAIQPTSEEVVTDVARTELRSYKQLPVNFYHIQTKFRDERRPRFGLMRGREFTMKDAYS 120
           DFAIQPTSEEVVTDVAR+ELRSYKQLPVNFYHIQTKFRDERRPRFGLMRGREFTMKDAYS
Sbjct: 103 DFAIQPTSEEVVTDVARSELRSYKQLPVNFYHIQTKFRDERRPRFGLMRGREFTMKDAYS 162

Query: 121 FDRDIDGLKKSYQVMYDAYVRIFTRFGLQFRAVAADNGAIGGSGSHEFHVIAATGEDALV 180
           FDRD+DGLKKSYQ MYDAYVRIFTRFGL+FRAVAADNGAIGGSGSHEFHV+AATGEDALV
Sbjct: 163 FDRDVDGLKKSYQAMYDAYVRIFTRFGLEFRAVAADNGAIGGSGSHEFHVVAATGEDALV 222

Query: 181 YCPTSDYAANMEAAEAVAVNATR 203
           YCPTSDYAANMEAAEA+ V++TR
Sbjct: 223 YCPTSDYAANMEAAEALPVDSTR 245


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 725,927
Number of extensions: 27121
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 178
Effective length of database: 1,226,865
Effective search space: 218381970
Effective search space used: 218381970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)