BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0027.p
         (372 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309708|ref|YP_003773800.1| gamma-glutamyl kinase [Herbaspi...   619   e-178

>gi|300309708|ref|YP_003773800.1| gamma-glutamyl kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 372

 Score =  619 bits (1595), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 314/372 (84%), Positives = 343/372 (92%)

Query: 1   MHSVIQQAKRLIIKVGSSLVTNDGKGLDSAAIAMWAEQIAHLRTLGKEVVLVSSGAIAEG 60
           M SVIQ+AKRLIIKVGSSLVTNDGKGLD+ AIA WAEQIA LR LGKEVVLVSSGA+AEG
Sbjct: 1   MQSVIQRAKRLIIKVGSSLVTNDGKGLDANAIARWAEQIAQLRALGKEVVLVSSGAVAEG 60

Query: 61  MQRLGFDRRPTGVHELQACAAVGQMGLAQIYETSFRAHQLGTAQVLLTHADLADRERYLN 120
           MQRLGF++RPTG+H LQACAAVGQMGLAQIYETSFR H L TAQVLLTHADLADRERYLN
Sbjct: 61  MQRLGFEKRPTGIHHLQACAAVGQMGLAQIYETSFRKHDLHTAQVLLTHADLADRERYLN 120

Query: 121 ARSTLFTLLRFGVVPIINENDTVVTDEIKFGDNDTLGALVANLIEADALIILTDQRGLYT 180
           ARSTLF LL+ GVVP+INENDTVVTDEIKFGDNDTLGALVANLIEA+ALIILTDQ GL+T
Sbjct: 121 ARSTLFALLQLGVVPVINENDTVVTDEIKFGDNDTLGALVANLIEAEALIILTDQPGLFT 180

Query: 181 ADPRRDPDAQFVHEAKAGDLALEAMAGGAGSGIGRGGMLTKILAAKRAATSGAHTVIAWG 240
           ADPR+DP A  + EA+AGD +LE +AGG G+GIGRGGMLTKILAAKRAATSGAHTVIAWG
Sbjct: 181 ADPRKDPTATLISEARAGDPSLELIAGGTGTGIGRGGMLTKILAAKRAATSGAHTVIAWG 240

Query: 241 REESVLSRLAAGEAIGTQLTAQTAQLTARKQWMADHLQTAGRVMLDDGAVQKLTAEGKSL 300
           REE VL+RLAAGEAIGTQL A+TAQLTARKQWMADHL+TAGRV+LD GAVQKL+ EGKSL
Sbjct: 241 REEQVLTRLAAGEAIGTQLNAETAQLTARKQWMADHLKTAGRVVLDAGAVQKLSLEGKSL 300

Query: 301 LPIGVTEVAGEFGRGDVITCVDASGKPVARGISNYASSDARRIVRHPSSEILSILGFVEE 360
           LPIGV EV+GEFGRGDVITCVD +G+ +ARG+SNY SSDARRI+RHPSSEI +ILGFVEE
Sbjct: 301 LPIGVVEVSGEFGRGDVITCVDENGRAIARGMSNYNSSDARRIIRHPSSEIQAILGFVEE 360

Query: 361 SELIHRDNLVLL 372
            EL+HRDNLVLL
Sbjct: 361 PELVHRDNLVLL 372


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,063,086
Number of extensions: 42445
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,207,925
Effective search space: 344258625
Effective search space used: 344258625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)