BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0026.p
         (167 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309707|ref|YP_003773799.1| GTPase [Herbaspirillum seropedi...   310   3e-86

>gi|300309707|ref|YP_003773799.1| GTPase [Herbaspirillum seropedicae
           SmR1]
          Length = 369

 Score =  310 bits (795), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 151/167 (90%), Positives = 158/167 (94%)

Query: 1   VSHEKSFVIADIPGLIEGAADGAGLGVQFLRHLQRTGLLLHIVDLAPFEDTVDPVKEAKA 60
           VSHEKSFVIADIPGLIEGAADGAGLGVQFLRHLQRTGLLLHIVDLAPF + VDPVKEAKA
Sbjct: 203 VSHEKSFVIADIPGLIEGAADGAGLGVQFLRHLQRTGLLLHIVDLAPFNEEVDPVKEAKA 262

Query: 61  IVKELQKYDDSLFDKPRWLVLNKLDVVPEADRKKRVKDFVKRFGWKGPVFEISALTRDGC 120
           IV+EL+KYD SLFDKPRWLVLNKLDVVPEA+R KRVKDFVKRFGWKGPVFEISAL RDGC
Sbjct: 263 IVQELKKYDQSLFDKPRWLVLNKLDVVPEAERAKRVKDFVKRFGWKGPVFEISALNRDGC 322

Query: 121 EDLITEIYGYLETKRHQEHRAEETQMTEEARGISSIDPDDPRFKVLD 167
           E+LI EIY YLETKR +EHR+EETQMTEEAR ISSIDPDDPRFKVLD
Sbjct: 323 EELINEIYKYLETKRAEEHRSEETQMTEEARAISSIDPDDPRFKVLD 369


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.140    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 498,206
Number of extensions: 17804
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,245,805
Effective search space: 109630840
Effective search space used: 109630840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)