BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0021.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309704|ref|YP_003773796.1| octaprenyldiphosphate synthase ...   529   e-151
gi|300313126|ref|YP_003777218.1| geranyltranstransferase [Herbas...   102   3e-23

>gi|300309704|ref|YP_003773796.1| octaprenyldiphosphate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  529 bits (1363), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/309 (84%), Positives = 291/309 (94%)

Query: 1   MGEVNTVIRRQLYSEVPLVNQVSEYIISAGGKRIRPVLVLLIANAYAYKGTAHHSLAAVI 60
           M  VN VIRRQLYSEVPLVNQV+EYIISAGGKR+RPVLV+LIANA+ YKG  HHSLAAVI
Sbjct: 1   MEAVNAVIRRQLYSEVPLVNQVAEYIISAGGKRLRPVLVVLIANAFGYKGEHHHSLAAVI 60

Query: 61  EFIHTATLLHDDVVDESSLRRGKETANALFGNAASVLVGDFLYSRAFQMMVTVGNARVMQ 120
           EFIHTATLLHDDVVDESSLRRGK+TANA+FGNAASVLVGDFLYSRAFQMMV VGN RVM+
Sbjct: 61  EFIHTATLLHDDVVDESSLRRGKQTANAMFGNAASVLVGDFLYSRAFQMMVAVGNPRVME 120

Query: 121 IVADATNVIAEGEVLQLLNMHNPDVNEEDYLRVIRSKTAKLFEAAAQLGALISGADEAGI 180
           IVADATNVIAEGEVLQLLNMHNPDV+E  YL+VIRSKTAKLFEAA+Q+GALI+GADEAGI
Sbjct: 121 IVADATNVIAEGEVLQLLNMHNPDVDENGYLQVIRSKTAKLFEAASQIGALIAGADEAGI 180

Query: 181 EAAGEYGRSLGTAFQLIDDVLDYSGNAAEIGKNVGDDLREGKPTLPLIYLMENGSPEQRE 240
           EAA EYGRS+GTAFQLIDDVLDYSGN+AEIGKNVGDDLREGKPTLPLI+LM++G+P+QRE
Sbjct: 181 EAAAEYGRSIGTAFQLIDDVLDYSGNSAEIGKNVGDDLREGKPTLPLIWLMQHGTPQQRE 240

Query: 241 LVRSCIENGDEQHFDQILAAITSSGALDYTRREAQKAAQRAADAVQSLPDSKYKNSLLEL 300
           LVR+CIENGDEQHFD++L+AIT SGAL YTR +A+ AA+RAADA+ SLPDS++K SLLEL
Sbjct: 241 LVRTCIENGDEQHFDEVLSAITHSGALAYTREQAEIAARRAADAIISLPDSQFKKSLLEL 300

Query: 301 STFAVDRNH 309
           S FAVDRNH
Sbjct: 301 SAFAVDRNH 309


>gi|300313126|ref|YP_003777218.1| geranyltranstransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  102 bits (255), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 135/253 (53%), Gaps = 33/253 (13%)

Query: 1   MGEVNT----VIRRQLYSE--VPL-VNQVSEYIISAGGKRIRPVLVLLIANAYAYKGTAH 53
           MG+V +    V+ R L S   VP  +++   Y    GGKR+RP+LV      +       
Sbjct: 16  MGQVQSGMEEVLNRFLPSASVVPARLHEAMRYTAMDGGKRVRPLLVYAAGELFDTPRALL 75

Query: 54  HSLAAVIEFIHTATLLHDDV--VDESSLRRGKETANALFGNAASVLVGDFLYSRAFQMMV 111
              AA +E IH  +L+HDD+  +D+ +LRRGK T +  +  A ++LVGD L ++AF  + 
Sbjct: 76  ERAAAAVEMIHVYSLVHDDMPCMDDDALRRGKPTVHIRYDEATALLVGDALQAQAFDTLA 135

Query: 112 T-----VGNA---------RVMQIVADATNVI--AEGEVLQLLNMHNPDVNEEDYLRVIR 155
                  G+A         R+++++A+A   +    G+ + L ++    ++  +  ++ R
Sbjct: 136 APLESEAGSADAGLPARQLRMVKLLAEAAGSVGMCGGQAIDLASV-GMTLSLAELEQMHR 194

Query: 156 SKTAKLFEAAAQLGAL----ISGADEAGIEAAGEYGRSLGTAFQLIDDVLDYSGNAAEIG 211
            KT  L  AA  LGAL    ++ A+ A ++   +Y R++G AFQ++DD+LD + ++A +G
Sbjct: 195 LKTGALLRAAVLLGALGGKALTAAESAALD---DYARAIGLAFQVVDDILDATADSATLG 251

Query: 212 KNVGDDLREGKPT 224
           K  G D  + KPT
Sbjct: 252 KTAGKDAADNKPT 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 777,406
Number of extensions: 27982
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 2
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)