BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0011.p (221 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 357 e-100 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 160 6e-41 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 131 6e-32 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 130 1e-31 gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC t... 124 5e-30 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 357 bits (917), Expect = e-100, Method: Compositional matrix adjust. Identities = 178/239 (74%), Positives = 191/239 (79%), Gaps = 34/239 (14%) Query: 17 SATGGTPALEISDLQSWYGESHILHNVNLSVNKGEVVTLLGRNGAGRTTTLRSIMGLVGA 76 S++ L+ISDLQSWYGESHILHNVNL+V++GEVVTLLGRNGAGRTTTLRSIMGLVG Sbjct: 4 SSSSAPLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGT 63 Query: 77 RKGSIRINGNETVAMPTYKIAHQGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSID 136 RKGSI+ING ET+ + T+KIAH GVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSID Sbjct: 64 RKGSIKINGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSID 123 Query: 137 EIYDMFPNLKERRNSQGTRLSG----------------------------------ALAR 162 EIY+MFPNLKERRNSQGTRLSG ALAR Sbjct: 124 EIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALAR 183 Query: 163 MILMLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSELESKTQKLNELLGV 221 MI LKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASS+LE+K Q LNELLGV Sbjct: 184 MITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLGV 242 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 160 bits (406), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 132/231 (57%), Gaps = 37/231 (16%) Query: 25 LEISDLQSWYGESHILHNVNLSVNKGEVVTLLGRNGAGRTTTLRSIMGLVGARKGSIRIN 84 L++ D+ +YG+SHIL V+L V+ GEVVTLLGRNGAG+TTTL+SI+G+V +G + Sbjct: 3 LQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVLFE 62 Query: 85 GNETVAMPTYKIAHQGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSIDEIYDMFPN 144 G +P+YKIA +GV PE RGIF L+ EENL + ++ + ++EIY +FP Sbjct: 63 GQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTM---AARKESAWGLEEIYAIFPR 119 Query: 145 LKERRNSQGTRLSG------ALARM------ILML----------------------KAK 170 LKERR + G +LSG A+AR +LML KA Sbjct: 120 LKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIKAT 179 Query: 171 GYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSELESKTQKLNELLGV 221 G +I++VEQN LADR Y++E G+IV +++E + + LGV Sbjct: 180 GMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGV 230 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 131 bits (329), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 117/227 (51%), Gaps = 39/227 (17%) Query: 25 LEISDLQSWYGESHILHNVNLSVNKGEVVTLLGRNGAGRTTTLRSIMGLVGARKGSIRIN 84 L++ L WY ++HIL ++L + GEVV L+GRNGAG++TTL+++MGL+ R+G IR+ Sbjct: 6 LQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQIRLA 65 Query: 85 GNETVAMPTYKIAHQGVGYCPEERGIFSSLSAEENL---MLPPFVSKTDKGMSIDEIYDM 141 G + + ++ A G+GY PE+R IF+ LS ENL PP + ++++ Sbjct: 66 GRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPH--WTPQALFEL 123 Query: 142 FPNLKERRNSQGTRLSGA----------------------------------LARMILML 167 FPNL G R+SG +A MI L Sbjct: 124 FPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQEL 183 Query: 168 KAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSELESKTQK 214 K G I++ EQN FA+ + DR Y+++ G+IV + + L++ Q+ Sbjct: 184 KRSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQQQ 230 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 130 bits (326), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 114/212 (53%), Gaps = 38/212 (17%) Query: 25 LEISDLQSWYGESHILHNVNLSVNKGEVVTLLGRNGAGRTTTLRSIMGLVGARKGSIRIN 84 L ++ LQ+ YG S +LH V+L+V +GE+V++LGRNGAGR+T L+++MGL+ +R G R Sbjct: 8 LSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLPSR-GDCRFE 66 Query: 85 GNETVAMPTYKIAHQGVGYCPEERGIFSSLSAEENLML--PPFVSKTDKGMSIDEIYDMF 142 G + +PT+ IA G+GY PE R +F +LS +NL+L P + +G D+I+ +F Sbjct: 67 GRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPG-PQPGRGWCEDDIHALF 125 Query: 143 PNLKERRNSQGTRLSGA----------------------------------LARMILMLK 168 P L +RR LSG +AR + L+ Sbjct: 126 PALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARALQELR 185 Query: 169 AKGYTIVMVEQNFRFAAPLADRFYVMEHGQIV 200 +G +++VEQ A L+ R YVM G++V Sbjct: 186 TRGVAVLLVEQKQALALELSQRVYVMGRGEMV 217 >gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 124 bits (312), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 39/223 (17%) Query: 34 YGESHILHNVNLSVNKGEVVTLLGRNGAGRTTTLRSIMGLVGARKGSIRINGNETVAMPT 93 YG+S +L +V+ ++ +GE + LLGRNG G+T+ L ++MGL GSIR G + + T Sbjct: 14 YGQSIVLEDVSFTMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGSIRWRGGDIARVAT 73 Query: 94 YKIAHQGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSIDEIYDMFPNLKERRNSQG 153 +K AH G+G+ P+ER +F SLS EE+L + K D + +IY +FP L ERR++ G Sbjct: 74 HKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKWD----LQKIYQIFPRLHERRHNMG 129 Query: 154 TRLSG------ALARMIL-----------------------------MLKAKGYTIVMVE 178 +LSG A+AR ++ ++ +G ++++VE Sbjct: 130 NQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSEEGMSVIVVE 189 Query: 179 QNFRFAAPLADRFYVMEHGQIVESFASSELESKTQKLNELLGV 221 Q+ R A L R V++ G+IV + S L + KL+ L+ V Sbjct: 190 QHARMALSLTQRAIVLDRGRIVHASDSQSLLADGDKLDRLVAV 232 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 648,649 Number of extensions: 25789 Number of successful extensions: 369 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 342 Number of HSP's successfully gapped: 42 Length of query: 221 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 139 Effective length of database: 1,231,600 Effective search space: 171192400 Effective search space used: 171192400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)