BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0010.p
         (92 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa...   173   2e-45
gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa...    80   3e-17
gi|300311944|ref|YP_003776036.1| branched-chain amino acid ABC t...    79   5e-17
gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPa...    76   6e-16
gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC t...    74   2e-15

>gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  173 bits (438), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 80/92 (86%), Positives = 89/92 (96%)

Query: 1   MEPELMLLDEPTQGMGHEDVDRVTALIKKVSVGRTILMVEHNMNVIAGICDRISVLQRGA 60
           MEPELMLLDEPTQGMGHEDVDRVTALIKKVS GRTILMVEHNM+VIAGICDRISVLQRGA
Sbjct: 165 MEPELMLLDEPTQGMGHEDVDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGA 224

Query: 61  VLAEGTYDQVSKNPQVMEAYMGTTAGALEGAH 92
           +LAEG+Y++VS+NPQVMEAYMG+T+  L+GAH
Sbjct: 225 LLAEGSYEEVSRNPQVMEAYMGSTSAELQGAH 256


>gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 80.1 bits (196), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 2   EPELMLLDEPTQGMG-HEDVDRVTALIKKVSVGRTILMVEHNMNVIAGICDRISVLQRGA 60
           +P+L+LLDEP  GM   E  + ++ ++     G TI M+EH+M  + G+C+RI+VL  G 
Sbjct: 168 KPKLLLLDEPVAGMNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGK 227

Query: 61  VLAEGTYDQVSKNPQVMEAYMG 82
           ++AEGT DQ+  N +V+EAY+G
Sbjct: 228 IIAEGTPDQIKNNQEVIEAYLG 249


>gi|300311944|ref|YP_003776036.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score = 79.3 bits (194), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 59/81 (72%)

Query: 2   EPELMLLDEPTQGMGHEDVDRVTALIKKVSVGRTILMVEHNMNVIAGICDRISVLQRGAV 61
           EPEL++LDEP  GM   + ++   L+ ++S GR+++++EH+M+ +  I  +++VL +G +
Sbjct: 174 EPELLMLDEPVAGMSVSEREKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKI 233

Query: 62  LAEGTYDQVSKNPQVMEAYMG 82
           LAEG+ ++V  +P+V++ Y+G
Sbjct: 234 LAEGSMEKVQSDPKVIDVYLG 254


>gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score = 75.9 bits (185), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 55/80 (68%)

Query: 3   PELMLLDEPTQGMGHEDVDRVTALIKKVSVGRTILMVEHNMNVIAGICDRISVLQRGAVL 62
           P ++L+DEP  GMGHE+   + ALI+ +    T+++VEH+M  +  + DR++VL +GAVL
Sbjct: 171 PRVLLMDEPMAGMGHEESGDMIALIQSLKEELTVVLVEHDMEAVFALADRMTVLVQGAVL 230

Query: 63  AEGTYDQVSKNPQVMEAYMG 82
           A G+ D++  N +V  AY+G
Sbjct: 231 ATGSVDEIRANAEVKLAYLG 250


>gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 655

 Score = 74.3 bits (181), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 1/79 (1%)

Query: 9   DEPTQGMGHEDVDRVTALIKKVS-VGRTILMVEHNMNVIAGICDRISVLQRGAVLAEGTY 67
           DEP  G+   D+  + A+I+K+   G TI+++EH+M+V+  ICD ++VL  G  +AEG  
Sbjct: 565 DEPAAGLTAPDIKELVAIIRKIREAGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKP 624

Query: 68  DQVSKNPQVMEAYMGTTAG 86
            QV  +P+V+EAY+G+ AG
Sbjct: 625 AQVQADPKVIEAYLGSGAG 643


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 263,219
Number of extensions: 8401
Number of successful extensions: 220
Number of sequences better than 1.0e-08: 28
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 28
Length of query: 92
Length of database: 1,619,870
Length adjustment: 62
Effective length of query: 30
Effective length of database: 1,326,300
Effective search space: 39789000
Effective search space used: 39789000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)