BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0107.p
         (262 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311914|ref|YP_003776006.1| aminodeoxychorismate lyase [Her...   458   e-130

>gi|300311914|ref|YP_003776006.1| aminodeoxychorismate lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  458 bits (1179), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 217/262 (82%), Positives = 242/262 (92%), Gaps = 1/262 (0%)

Query: 1   LXARGSGKGNRIKAGSYELKPGATPLRLLEQLVRGEFAQESLTIIEGWNFRQMRQAIADH 60
           L AR SG+G RIKAGSYE+KPG TP RLL+QLVRGEFAQE+LT+IEGW F+QMR+AIA+ 
Sbjct: 66  LYARLSGEGARIKAGSYEIKPGYTPQRLLQQLVRGEFAQEALTVIEGWTFKQMRKAIAEQ 125

Query: 61  KGLKHDTAALSNAELLAKLTTEFVVPEGLFFPDTYLFAKGASDMQIYRQAFILMSKRLNE 120
             LKHDTA  ++ ++LAKLT E+  PEGLFFPDTYLFAKGASDMQ+Y+QAF LMSK+LNE
Sbjct: 126 PALKHDTATWTDQQILAKLTNEYTYPEGLFFPDTYLFAKGASDMQVYKQAFALMSKKLNE 185

Query: 121 AWSKRDLSLPYKTPYDALIMASIVEKETGQKSERGMVAGVFVNRLKTGMLLQTDPTVIYG 180
           AW++RDLSLPY+TPY+ALIMASIVEKETGQKSERGMVAGVFVNRL+TGMLLQTDPTVIYG
Sbjct: 186 AWTRRDLSLPYRTPYEALIMASIVEKETGQKSERGMVAGVFVNRLRTGMLLQTDPTVIYG 245

Query: 181 MGERYQGVIRKSDLLTDTPYNTYTRKGMPPTPIALPGAASLAGAAMNPDKTEALYFVARG 240
           MGERYQG IRK DLLTDTPYNTYTR G+PPTPIALPGAASLA AA+NPDKTEALYFVARG
Sbjct: 246 MGERYQGKIRKVDLLTDTPYNTYTRAGLPPTPIALPGAASLA-AALNPDKTEALYFVARG 304

Query: 241 DGTSHFSSNLSEHNQAVNKYQR 262
           DGTSHFSSNL+EHNQAVN+YQR
Sbjct: 305 DGTSHFSSNLNEHNQAVNRYQR 326


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 761,224
Number of extensions: 28295
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 179
Effective length of database: 1,226,865
Effective search space: 219608835
Effective search space used: 219608835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)