BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0103.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311917|ref|YP_003776009.1| signal peptide protein [Herbasp...   306   9e-85

>gi|300311917|ref|YP_003776009.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 276

 Score =  306 bits (784), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 145/204 (71%), Positives = 172/204 (84%)

Query: 6   FAALTNVRAPTEKRPDAPTRGKLVSDYLAGALTPEQYVEHIRADAGQYNGFNLIVGDRET 65
           FAALTNVRAP+E+R DAPTRG+LV+DYLAG L P+ Y+  I A A QYNGFNL++G+R+T
Sbjct: 63  FAALTNVRAPSERRTDAPTRGQLVADYLAGNLDPQAYLRQIEAQAQQYNGFNLLLGNRDT 122

Query: 66  LLWYSNKGEEDPRNGKPLGYGVYGLSNALLDTPWPKLTRAKAQFASLLCQGAPEETFFEL 125
           +LWYSN+G++DPRNG+PL YGVYG+SNALLDTPWPKLTRAKAQFASLLCQGAPEETFFE+
Sbjct: 123 MLWYSNRGQQDPRNGQPLDYGVYGVSNALLDTPWPKLTRAKAQFASLLCQGAPEETFFEM 182

Query: 126 LSDSTRANDCRLPSTGVSQEWERVLSSIFICSPDYGTRASTVVRVPIVGEPVLSEHVSDP 185
           L+D+TRANDCRLP TG+  E ER+LS IFI SPDYGTR S+VVRVPIVGEPVL+EHV DP
Sbjct: 183 LTDATRANDCRLPDTGIGLEKERMLSPIFIRSPDYGTRCSSVVRVPIVGEPVLTEHVVDP 242

Query: 186 ITSCQSPPATEPQQKKSPCKLKLQ 209
           +    S      +  + PCK +LQ
Sbjct: 243 MAMQYSAEPATDKACRIPCKPRLQ 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 727,978
Number of extensions: 30496
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)