BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0102.p
         (86 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311930|ref|YP_003776022.1| C4-dicarboxylate transport tran...   147   2e-37
gi|300313823|ref|YP_003777915.1| C4-dicarboxylate transport tran...    70   3e-14
gi|300313118|ref|YP_003777210.1| proton glutamate symport protei...    53   6e-09

>gi|300311930|ref|YP_003776022.1| C4-dicarboxylate transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 441

 Score =  147 bits (371), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/86 (83%), Positives = 78/86 (90%)

Query: 1   VLAATLSAVGHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWSNELDEKRLHA 60
           VLAATLSAVGHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWS ELD +RL  
Sbjct: 356 VLAATLSAVGHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWSGELDSERLTK 415

Query: 61  QLNNETSEEADEPEAVLDRTEAKIHH 86
            LNNET E+A  PE++LDRT+AK+HH
Sbjct: 416 VLNNETVEDAQAPESILDRTDAKMHH 441


>gi|300313823|ref|YP_003777915.1| C4-dicarboxylate transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 445

 Score = 70.1 bits (170), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 50/78 (64%)

Query: 1   VLAATLSAVGHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWSNELDEKRLHA 60
           +LAATL+ +  +PV GL L+L ID F+  ARAL N +GN VAT+V+A W  ++D+ R  A
Sbjct: 356 ILAATLTTIPAIPVVGLVLVLSIDWFIGIARALGNLLGNCVATVVIASWERDIDKVRARA 415

Query: 61  QLNNETSEEADEPEAVLD 78
            LN E+     E   V++
Sbjct: 416 VLNGESVAPLVEENPVIE 433


>gi|300313118|ref|YP_003777210.1| proton glutamate symport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score = 52.8 bits (125), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 1   VLAATLSAVGHVPVAGLALILGIDRFMSEARALTNTIGNGVATLVVAKWSNEL 53
           V+AATL    ++P AGL +ILGID F+   R+ TN +GN +A+ VVAKW   L
Sbjct: 355 VIAATLHQF-NIPEAGLLVILGIDTFLDMGRSATNAVGNSIASAVVAKWEGGL 406


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.128    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 256,076
Number of extensions: 8450
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 3
Length of query: 86
Length of database: 1,619,870
Length adjustment: 56
Effective length of query: 30
Effective length of database: 1,354,710
Effective search space: 40641300
Effective search space used: 40641300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)