BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0093.p
         (438 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311541|ref|YP_003775633.1| H+/citrate symporter protein [H...   594   e-171

>gi|300311541|ref|YP_003775633.1| H+/citrate symporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 433

 Score =  594 bits (1531), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 299/438 (68%), Positives = 358/438 (81%), Gaps = 6/438 (1%)

Query: 1   MLALLGFITIIVLLTAILTKKMSPLAALIAIPFAAALIGGFGLGVGKFMVDGIKSIAPIV 60
           MLALLGF+TI+ L TAILTKKMSPL ALIAIP  AAL+GGFGL   KF+V G+ +IAP+ 
Sbjct: 1   MLALLGFVTIVSLFTAILTKKMSPLVALIAIPIVAALLGGFGLQTSKFIVQGVTAIAPVA 60

Query: 61  GMFVFAILFFGILKDAGMLDPIINKVLKVVGMRPSRIVLGSAVLAAVVHLDGSGAVTFLV 120
           GMFVFAILFFGI+ DAGMLDPII+++LK VG RP+RIV G+A+LA ++HLDGSGAVTFL+
Sbjct: 61  GMFVFAILFFGIVTDAGMLDPIISRILKTVGSRPTRIVPGTALLALLIHLDGSGAVTFLI 120

Query: 121 TIPALLPLYERLQMDKRILACVVAMAAGVANALPWGGPTLRAAAALHIPVADLYLPLVPV 180
           TIPA+LPLY RL +DKRILACV +MAAGV N LPW GP +RA+AALHIPV+D++ PL+PV
Sbjct: 121 TIPAMLPLYTRLGIDKRILACVTSMAAGV-NFLPWTGPMIRASAALHIPVSDIFTPLIPV 179

Query: 181 QICGMLFVFTCAWLLGKKEERRLGLTSENAAIKYQGISHHQQELSEDQQELRRPGRFLIN 240
           Q+ G+ FVF  ++LLG KEERRLGL  + A + +      Q ELSE Q ++RRP  F  N
Sbjct: 180 QLVGLTFVFIASYLLGLKEERRLGL-GKGATVDFV----QQHELSEAQLKIRRPQNFWAN 234

Query: 241 VALVLVVLGTMITGKVDPVVCFMIGTVLALFINYPDMAQQRARIDAHAKAALMMASILLA 300
           + L + VLG MI+GKVDPVV FMIG VLAL INY D+  QR RIDAHAKAAL+MASIL A
Sbjct: 235 IVLTIFVLGVMISGKVDPVVMFMIGVVLALMINYRDVTMQRERIDAHAKAALLMASILFA 294

Query: 301 AGVFTGIMKGTGMLTAMAKFVAGSIPVDMAHHLPAALAVISMPLSLLFDPDSFYFGVLPV 360
           AGVFTGIM  +GML+AMAK   G +P +MA H+P  L V+SMPLSLLFDPDSFYFGVLPV
Sbjct: 295 AGVFTGIMTKSGMLSAMAKTAVGLVPPEMASHIPVVLGVLSMPLSLLFDPDSFYFGVLPV 354

Query: 361 LAEATSALGVPSVQMAQASLLGQMTTGFPVSPLTPATFLLIGLVGIELSDHQKFTIPFLF 420
           +AE +  LGVP++Q+AQA+LLGQMTTGFPVSPLTPATFL+ GL GIEL+DHQK+TIPFLF
Sbjct: 355 IAEVSHMLGVPTIQVAQAALLGQMTTGFPVSPLTPATFLVCGLAGIELADHQKYTIPFLF 414

Query: 421 ATTIFMTIVAIMLGLFPL 438
             ++ MTI  ++LGLFPL
Sbjct: 415 GASLVMTIACVVLGLFPL 432


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.143    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,220,512
Number of extensions: 52566
Number of successful extensions: 259
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 350
Effective length of database: 1,203,190
Effective search space: 421116500
Effective search space used: 421116500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)