BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0092.p
         (448 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311540|ref|YP_003775632.1| hypothetical protein Hsero_2225...   719   0.0  

>gi|300311540|ref|YP_003775632.1| hypothetical protein Hsero_2225
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/446 (79%), Positives = 402/446 (90%), Gaps = 2/446 (0%)

Query: 2   KTIRIGAGSGNGYSGDRIEPAVELAEKGDLDYLIFECLAERTIAIGQQARRADPQKGYDP 61
           + +RIGAG+G  YSGDRIEPA ELAE+G+LDYLIFECLAERTIAIGQQAR ADP KGYDP
Sbjct: 7   RKVRIGAGAG--YSGDRIEPAAELAERGELDYLIFECLAERTIAIGQQARLADPTKGYDP 64

Query: 62  LLADRMHAVLKLCADKGIKIITNMGAANPLAGAARIREIALQLGLSHLKIASICGDDVLE 121
           LLA+RMHAVLK CADKG++IITNMGAANP A A R+REIA  LGL+HLK+A++ GDDVL+
Sbjct: 65  LLAERMHAVLKTCADKGVRIITNMGAANPAAAAQRVREIARTLGLAHLKVAAVTGDDVLQ 124

Query: 122 ILQQGDYRVEDNGLPVKSLGDKLISANAYLGAQPIVDALKAGADVVITGRIADPALALGP 181
            +Q+GD+R+EDNG PV SLG++LISANAYLG  PI++AL+AGADV+ITGR+ADPAL L P
Sbjct: 125 AVQEGDFRIEDNGQPVSSLGERLISANAYLGVAPILEALQAGADVIITGRVADPALVLAP 184

Query: 182 LIHEFGWAMDDWQRLGQGTVVGHLLECAGQITGGYFADPGVKDVKDLARLGFPIGEVSED 241
           L+HEFGWA DDW +LGQGT+VGHLLECAGQITGGYFADPG KDV  LARLGFPIGEVS D
Sbjct: 185 LVHEFGWAADDWDKLGQGTLVGHLLECAGQITGGYFADPGKKDVAGLARLGFPIGEVSAD 244

Query: 242 GSVVITKVAGSGGQVTAATCKEQLLYEIHNPAAYFTPDVIADFSQVTITEVGPDRVAISG 301
           GS VITKVAGSGGQVTA TCKEQLLYEIH+P+AY+TPDV+ADFSQV ITE+GPDRVA+SG
Sbjct: 245 GSAVITKVAGSGGQVTAQTCKEQLLYEIHDPSAYYTPDVVADFSQVQITEIGPDRVAVSG 304

Query: 302 GNGRARPATLKTTLGYIDSYVGEGQISYAGPGAQARGQLALDIVRERLALTGVQTDEVRY 361
           G GRARPATLKTTLGY DS++GEGQISYAGPGAQAR QLA +IVRERLALTGV+TDE+R 
Sbjct: 305 GRGRARPATLKTTLGYRDSFIGEGQISYAGPGAQARAQLAAEIVRERLALTGVETDELRL 364

Query: 362 DLIGVNAIHGAQLSAAVNEPYEVRARVAGRTASLREAIRIGNEVETLYTCGPAGGGGATK 421
           DLIG+NAI G Q+SA   EPYEVR RV+GRTAS+++A+RIGNEVETLYT GPAGGGGATK
Sbjct: 365 DLIGMNAIAGPQMSAGAPEPYEVRLRVSGRTASMQQAVRIGNEVETLYTNGPAGGGGATK 424

Query: 422 SAREVIAVLSMLLPRELVAPAIHFEE 447
           SAREVIAVLS+LLPR LV P++H EE
Sbjct: 425 SAREVIAVLSLLLPRSLVHPSVHIEE 450


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,559,684
Number of extensions: 72290
Number of successful extensions: 256
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,203,190
Effective search space: 433148400
Effective search space used: 433148400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)