BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0090.p
         (358 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311536|ref|YP_003775628.1| phosphoribosylglycinamide formy...   620   e-179
gi|300310010|ref|YP_003774102.1| phosphoribosylaminoimidazole ca...    87   3e-18

>gi|300311536|ref|YP_003775628.1| phosphoribosylglycinamide
           formyltransferase 2 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 403

 Score =  620 bits (1600), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 302/336 (89%), Positives = 319/336 (94%)

Query: 20  MKTPVRLGTPLSPSATKVMLLGSGELGKEVIIALQRLGVEVIAVDRYADAPGHQVAHRSH 79
           MK P RLGTPLS SATKVMLLGSGELGKEVIIALQRLGVEVIAVDRY +APGHQVAHR+H
Sbjct: 1   MKKPTRLGTPLSSSATKVMLLGSGELGKEVIIALQRLGVEVIAVDRYENAPGHQVAHRAH 60

Query: 80  VINMTDGAALAALIAKEQPDLVVPEIEAIATETLVELEKAGKAHVIPTARAAWLTMNREG 139
           VINMTDGAALAALI +E+PDL+VPEIEAIATETLV+LE+AG A VIPTARAAWLTMNREG
Sbjct: 61  VINMTDGAALAALIEQEKPDLIVPEIEAIATETLVKLEEAGLARVIPTARAAWLTMNREG 120

Query: 140 IRRLAGETLSLATSPYRFADSLEELKAATEQIGFPCVIKPVMSSSGKGQSKIDSAAEVEA 199
           IRRLAGETL LATSPYRFADSLEELKAA +QIG+PCVIKPVMSSSGKGQSKID   E+E+
Sbjct: 121 IRRLAGETLGLATSPYRFADSLEELKAAIDQIGYPCVIKPVMSSSGKGQSKIDGPDEIES 180

Query: 200 AWNYAAAGGRVDSGRVIVEGFIDFDYEITLLTVRSLNENGDTITSFCDPIGHVQVKGDYV 259
           AWNYAAAGGRVD+GRVIVEGFIDFDYEITLLTVRSLNENGDT+TSFCDPIGHVQVKGDYV
Sbjct: 181 AWNYAAAGGRVDAGRVIVEGFIDFDYEITLLTVRSLNENGDTVTSFCDPIGHVQVKGDYV 240

Query: 260 ESWQPHPMHPAALDKARDIARKVTENLGGLGLFGVELFVKGEMVWFSEVSPRPHDTGMVT 319
           ESWQPHPM  AAL+KARDIARKVTENLGGLGLFGVELFVKG+MVWFSEVSPRPHDTGMVT
Sbjct: 241 ESWQPHPMPGAALEKARDIARKVTENLGGLGLFGVELFVKGDMVWFSEVSPRPHDTGMVT 300

Query: 320 MVTQIQSEFELHAKAILGLPVNVALRTPGASAVXGG 355
           MV+Q+QSEFELHAKAILGLPVN ALRTPGASAV  G
Sbjct: 301 MVSQVQSEFELHAKAILGLPVNTALRTPGASAVIYG 336


>gi|300310010|ref|YP_003774102.1| phosphoribosylaminoimidazole
           carboxylase ATPase subunit [Herbaspirillum seropedicae
           SmR1]
          Length = 401

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 155/327 (47%), Gaps = 25/327 (7%)

Query: 22  TPVRLGTPLSPSATKVMLLGSGELGKEVIIALQRLGVEVIAVDRYADAPGHQVAHRSHVI 81
           +P+R   P +  AT + ++G G+LG+    A Q +G +V  ++  AD P  QVA R    
Sbjct: 7   SPLRPAVPSTTPATWLGVMGGGQLGRMFAHAAQSMGFKVAVLEADADCPAGQVADRLINA 66

Query: 82  NMTDGAALAALIAKEQPDLVVPEIEAIATETLVELEKAGKAHVIPTARAAWLTMNREGIR 141
              DG ALA L A      +  E E ++ ++L  L  A +  V P A    +  +R   +
Sbjct: 67  GYDDGPALAELGALCAA--ITTEFENVSAKSLATL--AAQTFVAPAASGVSIAQDRTAEK 122

Query: 142 RL---AGETLSLATSPYRFADSLEELKAATEQIGFPCVIKPV-MSSSGKGQSKIDSAAEV 197
                 G    +  +P+   +S  +++     +  P ++K   M   GKGQ ++ S  EV
Sbjct: 123 AFFTECGSQSGVLPAPHLVINSEADIEGLDANL-LPGILKTARMGYDGKGQVRVRSVEEV 181

Query: 198 EAAWNYAAAGGRVDSGRVIVEGFIDFDYEITLLTVRSLNENGDTITSFCDPIG-HVQVKG 256
            AA  +A+ GG       ++E  +   YE+++L  R    +G  +     PI  +V   G
Sbjct: 182 RAA--FASMGGVT----CVLEKMLPLAYEVSVLVAR--GHDGQAVVY---PIAENVHRDG 230

Query: 257 DYVESWQPHP-MHPAALDKARDIARKVTENLGGLGLFGVELFV--KGEMVWFSEVSPRPH 313
               +  P P +   A  +A+  A ++   L  +G+  +E FV   G +V  +E++PRPH
Sbjct: 231 ILFTTTVPGPNIKADAAARAQQAALQIIGALQYVGVLCIEFFVLEDGALV-VNEMAPRPH 289

Query: 314 DTGMVTMVTQIQSEFELHAKAILGLPV 340
           ++G  T+   + S+FE  A+A+  LP+
Sbjct: 290 NSGHYTIDACVTSQFEQQARAMARLPL 316


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,088,617
Number of extensions: 42670
Number of successful extensions: 211
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,212,660
Effective search space: 329843520
Effective search space used: 329843520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)