BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0089.p (516 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311535|ref|YP_003775627.1| L-aspartate oxidase [Herbaspiri... 870 0.0 gi|300312277|ref|YP_003776369.1| succinate dehydrogenase flavopr... 245 8e-66 >gi|300311535|ref|YP_003775627.1| L-aspartate oxidase [Herbaspirillum seropedicae SmR1] Length = 534 Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/533 (82%), Positives = 462/533 (86%), Gaps = 24/533 (4%) Query: 1 MKFDVAIIGSGLAGLSVALHLAEKKNVVVVSKGELLDGASNWAQGGIAAVLDSGDSHDQH 60 MK DVAI+GSGLAGLSVALHLAEK VVVVSKGELLDGASNWAQGGIAAVLDS DSH QH Sbjct: 1 MKCDVAILGSGLAGLSVALHLAEKYQVVVVSKGELLDGASNWAQGGIAAVLDSHDSHAQH 60 Query: 61 IDDTLIAGXSHDQHIDDTLIIVEHGREAIEWLIEQGVPFTRDASAELGYHLTREGGHSQR 120 I DTL+AG T IVE GREAIEWLIEQGVPFTRD SAELGYHLTREGGHSQR Sbjct: 61 IADTLVAGAGLCDE-SATRTIVEQGREAIEWLIEQGVPFTRDDSAELGYHLTREGGHSQR 119 Query: 121 RIIHAADATGHAVQVTLEQRVRAHPNITLLEHHCAIDVITTKKLDPAAEGTPRCVGVYVQ 180 RIIHAADATGHAVQVTLEQRVRAHPNITLLEHHCAID+I +KLD AE PRC+GV+VQ Sbjct: 120 RIIHAADATGHAVQVTLEQRVRAHPNITLLEHHCAIDLIHARKLDAKAE--PRCLGVHVQ 177 Query: 181 DIKQGKVVTIAADHTVLATGGAGKVYLYTSNPDSATGDGIAMASRAGCRVANMEFIQFHP 240 D GKV+ IAA TVLATGGAGKVYLYTSNPDSATGDGIAMA RAGCRVANMEFIQFHP Sbjct: 178 DTASGKVLAIAAARTVLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEFIQFHP 237 Query: 241 TCLYHPYAKSFLISEALRGEGALLKLP------------------AXLAPRDIVARSIDF 282 TCLYHPYAKSFLISEALRGEGALLKLP A LAPRD+VAR+IDF Sbjct: 238 TCLYHPYAKSFLISEALRGEGALLKLPLSAGAAAGQRFMPEHDERAELAPRDVVARAIDF 297 Query: 283 EMKKRGLDHVDLDISHQPPEFIKEHFPTIQARCLEFGIDITKQPIPVVPAAHYTCGGVVT 342 EMKKRGLDHVDLDISHQ P FI EHFPTIQARCLEFGIDIT+QPIPVVPAAHYTCGGVVT Sbjct: 298 EMKKRGLDHVDLDISHQSPAFIAEHFPTIQARCLEFGIDITRQPIPVVPAAHYTCGGVVT 357 Query: 343 DMSGRTDLPGLYAVGETAYTGLHGANRLASNSLLECLVLGRAAAQFIEQQAAAP---VIA 399 DM+GRTDLPGLYAVGETAYTGLHGANRLASNSLLECLVLGRAAA IE + AA V Sbjct: 358 DMAGRTDLPGLYAVGETAYTGLHGANRLASNSLLECLVLGRAAAADIEHELAAGSWRVDE 417 Query: 400 LPAWDESRVTNADEEVVISHNWDELRRFMWNYVSIVRTNKRLERAQHRIRLLREEIDEYY 459 +PAWDESRVT+ADEEVVI+HNWDELRRFMWNYVSIVRT+KRLERAQHRIRLL+EEIDEYY Sbjct: 418 VPAWDESRVTDADEEVVIAHNWDELRRFMWNYVSIVRTDKRLERAQHRIRLLKEEIDEYY 477 Query: 460 ANFRITRDLLELRNLVEVASLIVNSALARKESRGLHYSLDYPDTLAEAVPTVL 512 ANFRI+RDLLELRNLV+VA LIV+SAL RKESRGLH+S DYP TL A PT+L Sbjct: 478 ANFRISRDLLELRNLVDVAQLIVSSALMRKESRGLHFSQDYPRTLPRATPTIL 530 >gi|300312277|ref|YP_003776369.1| succinate dehydrogenase flavoprotein subunit [Herbaspirillum seropedicae SmR1] Length = 592 Score = 245 bits (625), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 194/553 (35%), Positives = 280/553 (50%), Gaps = 69/553 (12%) Query: 2 KFDVAIIGSGLAGLSVALHLAEKK-NVVVVSKGELLDGASNWAQGGIAAVLD--SGDSHD 58 +FD I+G+G +G+ +L LAE NV V+SK + AQGGI A L S D+ Sbjct: 12 RFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWY 71 Query: 59 QHIDDTLIAGXSHDQHIDDTLIIVEHGREAIEWLIEQGVPFTRDASAEL-----GYHLTR 113 H+ DT + G + D + +A+ L G+PF R+ + G H Sbjct: 72 WHMFDT-VKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIYQRPFGGHTAN 130 Query: 114 EGGHSQRRIIHAADATGHAVQVTLEQR-VRAHPNITLLEHHCAIDVITTKKLDPAAEGTP 172 G +R AAD TGHA+ TL QR VRA + + A+D+I ++ D Sbjct: 131 LGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFV--EWMALDLIRNEEGD------- 181 Query: 173 RCVGVYVQDIKQGKVVTIAADHTVLATGGAGKVYLYTSNPDSATGDGIAMASRAGCRVAN 232 +GV +++ G+++ + A T+ ATGGAG+++ ++N TGDG+ MA+RAG + + Sbjct: 182 -VLGVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQD 240 Query: 233 MEFIQFHPTCLYHPYAKSFLISEALRGEGALL-------------KLPAXLAPRDIVARS 279 MEF QFHPT + LI+E +RGEG +L LAPRD V+RS Sbjct: 241 MEFWQFHPTGV---AGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRS 297 Query: 280 IDFEMKK-RGL----DHVDLDISHQPPEFIKEHFPTIQARCLEFG-IDITKQPIPVVPAA 333 +D E+K+ RG+ DHV LD+ H + IK+ P+I +F +D TK+PIPVVP Sbjct: 298 MDQEIKEGRGVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTI 357 Query: 334 HYTCGGVVTDMSGRTDLP----------GLYAVGETAYTGLHGANRLASNSLLECLVLGR 383 HY GG+ T++ G+ P G+YA+GE A +HGANRL +NSLL+ +V GR Sbjct: 358 HYQMGGIPTNIHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGR 417 Query: 384 AAAQFI-----EQQAAAPVIALPAWDES--RVTNADEEVVISHNWD---ELRRFMWNYVS 433 AA I + Q+ P+ A A D S R+ + + D ++R M Y Sbjct: 418 AAGNHIVGSRLQDQSHKPIPA-GALDRSLERIAHLESSTGSERVQDVANDIRATMQKYCG 476 Query: 434 IVRTNKRLERAQHRIRLLRE-----EIDEYYANFRITR-DLLELRNLVEVASLIVNSALA 487 + RT+ L+ +I L E + F R + LEL NL+E A + SA A Sbjct: 477 VFRTDALLQEGYTKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAA 536 Query: 488 RKESRGLHYSLDY 500 RKESRG H DY Sbjct: 537 RKESRGAHAHSDY 549 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,579,037 Number of extensions: 65660 Number of successful extensions: 258 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 246 Number of HSP's successfully gapped: 2 Length of query: 516 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 427 Effective length of database: 1,198,455 Effective search space: 511740285 Effective search space used: 511740285 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)