BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0085.p
         (269 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312099|ref|YP_003776191.1| carboxylesterase [Herbaspirillu...   115   5e-27

>gi|300312099|ref|YP_003776191.1| carboxylesterase [Herbaspirillum
           seropedicae SmR1]
          Length = 303

 Score =  115 bits (287), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 131/254 (51%), Gaps = 14/254 (5%)

Query: 6   GVIMIHGLGGTQYDLGAMHKILQKAGADTHAVTLPGHG---TRPEDLIPIRAEQWIDLLI 62
            VI++HGL G+Q ++G++ K L+KAG     + +  +    T P   +    E+W  ++ 
Sbjct: 30  AVILLHGLCGSQLEMGSIPKQLKKAGCTVIPLNIDNYSAALTNPR--VSPNWEEWCAVVE 87

Query: 63  AQYRELQPQYEQLHVMGMCMGALLALALCERVGHTAKQGKLVTLAPPIYIDGWSTPWYAN 122
           ++   L+ ++  + + G+ MGA LALA+  R   + +   +V L+P +  DGWS PWY  
Sbjct: 88  SRVARLKEEFRTVSLCGLSMGATLALAVAAR---SKELLSVVLLSPVLQYDGWSVPWYWK 144

Query: 123 LRRLFYLIPGVASRMKVEEGEPYGIKNTLVRAVVKAKFERGD--NFHYPWVPMACIRQVD 180
           L  + Y +         +E EPYGIKN  +R  V +  E+          +P   +R   
Sbjct: 145 LLTVVYDLG--FRNWSYKESEPYGIKNFEMRRRVASALEKDGVAAVGAASIPARHLRAAL 202

Query: 181 RLRGWAAAGAKNIKAPTLIVHAREDELTSLRSAE-FLQARIADARTVV-LENSYHMICVD 238
           R+  +       ++  TLI+H+ +DE  S R+AE  LQ   A+ R VV L + YH+I VD
Sbjct: 203 RMIDYVKQSLPLVRTDTLIIHSIDDETASPRNAEQILQYINAEVRKVVWLGDCYHIITVD 262

Query: 239 NDRDQVANSVLEFF 252
           N+R+ V N  + F 
Sbjct: 263 NEREIVTNETVMFI 276


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 828,628
Number of extensions: 32108
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,222,130
Effective search space: 226094050
Effective search space used: 226094050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)