BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0083.p
         (295 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311532|ref|YP_003775624.1| nicotinate-nucleotide pyrophosp...   460   e-131

>gi|300311532|ref|YP_003775624.1| nicotinate-nucleotide
           pyrophosphorylase [Herbaspirillum seropedicae SmR1]
          Length = 301

 Score =  460 bits (1184), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/294 (81%), Positives = 265/294 (90%)

Query: 2   SLTVSSTSNLRNPFAPFDPALSAAFDANVNLAIAEDVGNGDHTGKLVPENEHVKARVIVR 61
           S +  + SNLRNPF PFD AL AAFDANVN AIAEDVG+ D+TG LVPE+E VKARVIVR
Sbjct: 8   SASTIAASNLRNPFGPFDAALHAAFDANVNQAIAEDVGDCDYTGLLVPESEFVKARVIVR 67

Query: 62  EQAVLCGAPWFEAVMARLDPRLRVDWKFGEGDLMPADAEVCRIEGPARALLTAERGALNF 121
           E AVLCGAPWFEAVM RLDPRL+V W++ EG+ M AD+EVC IEGPARALLTAERGALNF
Sbjct: 68  EAAVLCGAPWFEAVMTRLDPRLQVSWRYAEGERMAADSEVCTIEGPARALLTAERGALNF 127

Query: 122 LQLLSGVATATHRYVDLIRDTRARILDTRKTLPGLRLAQKYAVRVGGGMNQRLALYDGIL 181
           LQLLSGVA+AT RYVD+++ TRA ILDTRKTLPGLRLAQKYAVRVGGG+NQRLALYDGIL
Sbjct: 128 LQLLSGVASATRRYVDVVQGTRASILDTRKTLPGLRLAQKYAVRVGGGVNQRLALYDGIL 187

Query: 182 IKENHIAAAGGITAAVTAAIKLNAGVSIQVEVESIDELGEALAAGATSILLDNFSLDMMR 241
           IKENHIAAAGGITAAV AA+KLNAGVSIQVEVESIDEL EAL AGA SILLDNFSL+MMR
Sbjct: 188 IKENHIAAAGGITAAVAAALKLNAGVSIQVEVESIDELKEALQAGARSILLDNFSLEMMR 247

Query: 242 EGVMINARRAVLEASGGINMETVRAIAETGVDRISVGSLTKDLQAIDYSLRIIG 295
           E V +NA RA+LEASGGINM+TVRAIAETGVDRIS+GSLTKD+QA D+SLR++G
Sbjct: 248 EAVTVNAGRALLEASGGINMQTVRAIAETGVDRISIGSLTKDVQATDFSLRVVG 301


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 822,914
Number of extensions: 32302
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,217,395
Effective search space: 255652950
Effective search space used: 255652950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)