BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0082.p
         (374 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311531|ref|YP_003775623.1| quinolinate synthetase A protei...   709   0.0  

>gi|300311531|ref|YP_003775623.1| quinolinate synthetase A protein
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/373 (90%), Positives = 354/373 (94%)

Query: 2   KVVEFERPQMETGSSCTANAWAKVPATPTADERQALKARIRQLLKEKQAVLVAHYYVDGD 61
           KVVEFERPQMETG SCTANAWAKVPATP+ +ER  LKARIRQLLKEKQAVLVAHYYVDGD
Sbjct: 7   KVVEFERPQMETGGSCTANAWAKVPATPSPEERAQLKARIRQLLKEKQAVLVAHYYVDGD 66

Query: 62  LQDLAEETGGCVSDSLEMARFGRDHAAQTLVVAGVRFMGETAKILSPEKRILMPDLDATC 121
           LQDLAEETGGCVSDSLEMARFGRDHAAQTLVVAGVRFMGETAKILSPEKRILMPDL+ATC
Sbjct: 67  LQDLAEETGGCVSDSLEMARFGRDHAAQTLVVAGVRFMGETAKILSPEKRILMPDLEATC 126

Query: 122 SLDLGCPTDEFNAFCDAHPDRTVVVYANTSAAVKARADWMVTSSIGLDIVKHLHAQGKKI 181
           SLDLGCP DEF AFCD HPDRTVVVYANTSAAVKARADWMVTS IGL+IV+HLHAQGKKI
Sbjct: 127 SLDLGCPADEFAAFCDQHPDRTVVVYANTSAAVKARADWMVTSGIGLEIVQHLHAQGKKI 186

Query: 182 LWAPDKHLGGYIQKQTGADMLLWQGSCLVHDEFKGVELELLRKEYPKALILVHPESPEGV 241
           LWAPDKHLG YIQKQTGADMLLWQGSCLVHDEFKGVELEL+R E+P AL+LVHPESPE V
Sbjct: 187 LWAPDKHLGSYIQKQTGADMLLWQGSCLVHDEFKGVELELMRAEHPDALVLVHPESPEAV 246

Query: 242 VAQADVIGSTSQLIAAVQSSDAKEFIVATDNGILHKMRAAAPGKVFIDAPTAGNSATCKS 301
           VAQADVIGSTSQLIAAVQ+SDA  FIVATDNGILHKMRAAAPGK FIDAPTAGNSATCKS
Sbjct: 247 VAQADVIGSTSQLIAAVQASDAPAFIVATDNGILHKMRAAAPGKRFIDAPTAGNSATCKS 306

Query: 302 CAHCPWMAMNGLQNLLHVLETGSNEIHVDPAIGRKAVVCIDRMLDFAAQKKANVRPTGAL 361
           CAHCPWMAMNGLQNLLHVLETG+NEIHVDPA+G++AVVCIDRMLDFAAQ+KA VRP+  L
Sbjct: 307 CAHCPWMAMNGLQNLLHVLETGANEIHVDPAVGKQAVVCIDRMLDFAAQRKAKVRPSARL 366

Query: 362 ENEQTLFAGIGPA 374
           E+EQ LFAGIGPA
Sbjct: 367 EDEQQLFAGIGPA 379


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,188,157
Number of extensions: 48409
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,207,925
Effective search space: 346674475
Effective search space used: 346674475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)