BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0081.p (144 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbasp... 277 2e-76 gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbasp... 94 3e-21 gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbasp... 93 7e-21 gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbasp... 77 4e-16 >gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 532 Score = 277 bits (709), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 131/144 (90%), Positives = 139/144 (96%) Query: 1 MPQDPTEEFAKGEILTDWMGQWTQEGDDDQAVRSILGRLLFSGDDVKKSVQVLSGGEKGR 60 MPQDPTEEFA GE LTDWMG+WTQEGDDDQAVR ILGRLLFSGDDVKKSV+VLSGGEKGR Sbjct: 389 MPQDPTEEFAGGETLTDWMGKWTQEGDDDQAVRGILGRLLFSGDDVKKSVKVLSGGEKGR 448 Query: 61 MMYGKLMLGRHNILLMDEPTNHMDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRIL 120 MMYGKLMLGRHN+LLMDEPTNHMDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRIL Sbjct: 449 MMYGKLMLGRHNVLLMDEPTNHMDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRIL 508 Query: 121 EVKENEIIDFRGSYEDYLSSQGIE 144 EVK+ ++IDF+G YEDYL+SQGIE Sbjct: 509 EVKDGQVIDFQGGYEDYLASQGIE 532 Score = 60.8 bits (146), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Query: 53 LSGGEKGRMMYGKLMLGRHNILLMDEPTNHMDMESIESLNIALEKYAGTLIFVSHDREFV 112 ++ G K R++ + + +ILL+DEPTN++D+ +I L L + T+I +SHDR F+ Sbjct: 156 VAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEEVLNERNSTMIIISHDRHFL 215 Query: 113 SSLATRILEVKENEIIDFRGSYEDYL--SSQG 142 + + T + ++ + + G+Y+DY+ SSQ Sbjct: 216 NQVCTHMADMDYGTLKIYPGNYDDYMLASSQA 247 >gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 660 Score = 94.4 bits (233), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 68/109 (62%) Query: 29 DQAVRSILGRLLFSGDDVKKSVQVLSGGEKGRMMYGKLMLGRHNILLMDEPTNHMDMESI 88 +Q +R+ LG F+G S+ SGGEK R+ ++ R N+LL+DEPTNH+D+E+ Sbjct: 421 EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETR 480 Query: 89 ESLNIALEKYAGTLIFVSHDREFVSSLATRILEVKENEIIDFRGSYEDY 137 E+L +AL ++ GTL+ VSHDR + + + L V E ++ F G +DY Sbjct: 481 EALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDDY 529 Score = 73.2 bits (178), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 69/114 (60%), Gaps = 4/114 (3%) Query: 28 DDQAVRSILGRLL----FSGDDVKKSVQVLSGGEKGRMMYGKLMLGRHNILLMDEPTNHM 83 D VRS +LL FS + +++ V SGG + R+ + ++ ++LL+DEPTNH+ Sbjct: 125 DAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHL 184 Query: 84 DMESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVKENEIIDFRGSYEDY 137 D+++I L L++Y GTL+ +SHDR+F+ + I+ + + ++ + G+Y + Sbjct: 185 DLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAF 238 >gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 555 Score = 93.2 bits (230), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 74/106 (69%), Gaps = 1/106 (0%) Query: 33 RSILGRLLFSGDDVKKSVQVLSGGEKGRMMYGKLMLGRHNILLMDEPTNHMDMESIESLN 92 R+ LGR F G D +K V LSGGE+GR+ K +L N+LL+DEP+N +D+E++ +L Sbjct: 425 RAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETLRALE 484 Query: 93 IALEKYAGTLIFVSHDREFVSSLATRILEVK-ENEIIDFRGSYEDY 137 AL ++AGT++ +SHDR F+ +AT I+ + ++++ F G+Y++Y Sbjct: 485 DALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDGNYQEY 530 Score = 83.6 bits (205), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 38/92 (41%), Positives = 63/92 (68%) Query: 50 VQVLSGGEKGRMMYGKLMLGRHNILLMDEPTNHMDMESIESLNIALEKYAGTLIFVSHDR 109 + VLSGGEK R+ KL+L + ++LL+DEPTNH+D ES++ L L+++ GT++ ++HDR Sbjct: 160 IGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAESVDWLEQFLQRFPGTVVAITHDR 219 Query: 110 EFVSSLATRILEVKENEIIDFRGSYEDYLSSQ 141 F+ + A ILE+ I ++G+Y +L + Sbjct: 220 YFLDNAAEWILELDRGHGIPWKGNYSSWLEQK 251 >gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 640 Score = 77.4 bits (189), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 59/90 (65%) Query: 53 LSGGEKGRMMYGKLMLGRHNILLMDEPTNHMDMESIESLNIALEKYAGTLIFVSHDREFV 112 LSGG K R+ ++G ++LL+DEPTNH+D SI L L + G+++F++HDR F+ Sbjct: 157 LSGGMKKRVALACGLVGNPDVLLLDEPTNHLDFGSILWLEGLLRDFKGSILFITHDRSFL 216 Query: 113 SSLATRILEVKENEIIDFRGSYEDYLSSQG 142 +++TRI+E+ +I+ F G++ Y + + Sbjct: 217 DNVSTRIIELDRGKILSFPGNFTTYQTRKA 246 Score = 74.7 bits (182), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 71/117 (60%), Gaps = 1/117 (0%) Query: 22 WTQEGDDDQAVRSILGRLLFSGDDVKKSVQVLSGGEKGRMMYGKLMLGRHNILLMDEPTN 81 W + + V + L LF+ + + V+ LSGGE+ R++ +L N+L++DEPTN Sbjct: 410 WVEVNGQRKHVMTYLSDFLFAPERARSPVRTLSGGERNRLLLARLFAKPANVLVLDEPTN 469 Query: 82 HMDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVKENEI-IDFRGSYEDY 137 +D++++E L LE+Y GT+ VSHDR F+ ++ T+++ + N + ++ G Y D+ Sbjct: 470 DLDIDTLELLEELLEEYEGTVFLVSHDRMFLDNVVTQVIASEGNGVWREYVGGYSDW 526 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 422,118 Number of extensions: 15224 Number of successful extensions: 215 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 249 Number of HSP's successfully gapped: 8 Length of query: 144 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 67 Effective length of database: 1,255,275 Effective search space: 84103425 Effective search space used: 84103425 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)