BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0078.p
         (177 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311528|ref|YP_003775620.1| microcin C7 resistance protein ...   226   1e-60

>gi|300311528|ref|YP_003775620.1| microcin C7 resistance protein
           [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score =  226 bits (575), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 107/194 (55%), Positives = 138/194 (71%), Gaps = 17/194 (8%)

Query: 1   MLCSDFGAETPSAMTMNSFWRTLTQPTQTIA----------------VEEAGNPALKVSG 44
           MLC DFGAETP    +  FW+TLT P  T+                   +  +P ++  G
Sbjct: 138 MLCGDFGAETPDWQALACFWKTLTSPQVTVRNYSGPDGMDRAPIGDRRTDPASPVVRCEG 197

Query: 45  KLWGGNLAMVVHLLGTPYFPQVDGGILFVEDVNEHPYRVERMLLQLEHAGVLARQKAVLL 104
           KLWGGNLAM+ H++G P F  V+GGILF+EDVNEHP+RVERM+LQL  AGVLARQ+A+LL
Sbjct: 198 KLWGGNLAMMAHMVGHPQFAPVEGGILFLEDVNEHPFRVERMILQLHQAGVLARQRAILL 257

Query: 105 GDFSNYRLSDYDNGYNFEQMLGYARQHLSAPLLTGLPFGHIADRVSLPVGAHAELESD-A 163
           GDFS YRL++ DNGY+F QML + RQH++ P++TGLPFGH+ D V+LP+GAHA L++  A
Sbjct: 258 GDFSGYRLAEIDNGYDFTQMLAFLRQHIATPIVTGLPFGHVRDLVTLPIGAHAVLDAQGA 317

Query: 164 RGFSLRLSGYPILS 177
            GF+L LS YP L+
Sbjct: 318 DGFTLTLSDYPTLT 331


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 629,185
Number of extensions: 27271
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 98
Effective length of database: 1,245,805
Effective search space: 122088890
Effective search space used: 122088890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)