BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0072.p
         (734 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312801|ref|YP_003776893.1| hypothetical protein Hsero_3506...  1367   0.0  

>gi|300312801|ref|YP_003776893.1| hypothetical protein Hsero_3506
           [Herbaspirillum seropedicae SmR1]
          Length = 736

 Score = 1367 bits (3537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 654/724 (90%), Positives = 690/724 (95%)

Query: 1   MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCN 60
           MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCN
Sbjct: 1   MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCN 60

Query: 61  TRNISTENIRLSQNNIVDPENRYQQIFKIQVELPADIEETDRRGILRSIERCTVKKVVQA 120
           TRNISTENIRLSQNNIVDPENRYQQ FKIQVELPADIEE DRRGILRSIERCTVKKVVQ 
Sbjct: 61  TRNISTENIRLSQNNIVDPENRYQQTFKIQVELPADIEEADRRGILRSIERCTVKKVVQQ 120

Query: 121 GPEFIIEEVESLDADAQSLLTLKPDSDASTFILGKDLPLEQTIANMSGILAGLGIKIEIA 180
           GPEF+IEEVESLDADAQSLLTLKP++  ST ILGKDLPLEQTIANMSG+LA LGIKIEIA
Sbjct: 121 GPEFVIEEVESLDADAQSLLTLKPEAGVSTHILGKDLPLEQTIANMSGLLAELGIKIEIA 180

Query: 181 SWRNIIPNVWSLHIRDAHSPMCFTNGKGATKESALASALGEYIERLNNNHFYAGAFWGED 240
           SWRNIIPNVWSLHIRDAHSPMCFTNGKGATKESALASALGEYIER++NNHFYAG++WGED
Sbjct: 181 SWRNIIPNVWSLHIRDAHSPMCFTNGKGATKESALASALGEYIERISNNHFYAGSYWGED 240

Query: 241 IAEAAFVHYPNERWFQPGRKDALPKEILDPYCLEIYNPDGELRASHLVDTNSGNVKRGIC 300
           IA A FVHYPNERWF+PGR D LPKEILD YCL IYN DGELRASHLVDTNSGN +RGIC
Sbjct: 241 IANAEFVHYPNERWFKPGRGDKLPKEILDAYCLGIYNADGELRASHLVDTNSGNAERGIC 300

Query: 301 SLPYVRQSDGETVYFPSNLIENLFVSNGMSAGNTLAEAQVQCLSEIFERAVKREILEGEI 360
           SLPYVRQSDGE VYFPSNL+ENLFVSNGMSAGNTL EAQVQCLSEIFERAVKREILEGEI
Sbjct: 301 SLPYVRQSDGEVVYFPSNLVENLFVSNGMSAGNTLPEAQVQCLSEIFERAVKREILEGEI 360

Query: 361 TLPDVPQEVLAKYPGILAGIKGLEEQGFPVLVKDASLGGIYPVMCVTLMNPRTGGVFASF 420
            LPDVPQEVLAKYPGI+AGI+GLEEQGFPVLVKDASLGG+YPVMCVTLMNPRTGGVFASF
Sbjct: 361 CLPDVPQEVLAKYPGIVAGIQGLEEQGFPVLVKDASLGGVYPVMCVTLMNPRTGGVFASF 420

Query: 421 GAHPSFEVALERSLTELLQGRSFEGLNDLPAPTFESNAVTEPNNFVEHFIDSSGIVSWRF 480
           GAHPSFEVALERSLTELLQGRSFEGLNDLP PTFESNAVTEPNNFVEHFIDSSGIVSWRF
Sbjct: 421 GAHPSFEVALERSLTELLQGRSFEGLNDLPQPTFESNAVTEPNNFVEHFIDSSGIVSWRF 480

Query: 481 FSSKANYEFVEWDFSGQGENSNAEEAATLFGILKEMGKEAYVAVYDQLGAMACRILVPGY 540
           FS+K +YEFVEWDFS QG+++NAEEAATLF IL++MGKEAYVAVYDQLGA ACRILVPGY
Sbjct: 481 FSAKPHYEFVEWDFSSQGDHANAEEAATLFAILEDMGKEAYVAVYDQLGATACRILVPGY 540

Query: 541 SEVYPVEDLIWDNTNKALLFRADVLNLHRLDDAALEALLERLENSELDEYSDIATLIGIE 600
           SEVYPVEDLIWDNTNKALLFRAD+LNLHRLDD AL ALL+RLEN+ELDEYSDIATLIGI+
Sbjct: 541 SEVYPVEDLIWDNTNKALLFRADILNLHRLDDEALAALLDRLENNELDEYSDIATLIGID 600

Query: 601 FDENTVWGQLTVLELKLLIQLALQQFEEAQDLVGAFLQYNDNTVERGLFYQALKVVLEVQ 660
           FDENTVWGQLTVLELKLLI LALQQFEEA +LVGAFLQYNDN+VERGLFYQAL VVLEV+
Sbjct: 601 FDENTVWGQLTVLELKLLIHLALQQFEEAHELVGAFLQYNDNSVERGLFYQALNVVLEVE 660

Query: 661 LDDDLELDDYVLNFRRMFGDARMDAVMGSVDGSVRFFGLTPTSMKLEGLDRHQRLIDSYK 720
           LD++L L+DY  NFRRMFG+ RMDA +GS+ GSVRFFGLTPTSMKLEGLDRHQRL+DSY+
Sbjct: 661 LDEELALEDYETNFRRMFGNERMDAAIGSITGSVRFFGLTPTSMKLEGLDRHQRLLDSYR 720

Query: 721 KLHK 724
           KLHK
Sbjct: 721 KLHK 724


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,110,944
Number of extensions: 85112
Number of successful extensions: 207
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 1
Length of query: 734
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 642
Effective length of database: 1,184,250
Effective search space: 760288500
Effective search space used: 760288500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)