BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0062.p (528 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 314 1e-86 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 254 1e-68 gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 231 8e-62 gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 206 3e-54 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 314 bits (805), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 228/523 (43%), Positives = 306/523 (58%), Gaps = 24/523 (4%) Query: 9 DPGHLQQLMTLLTQSIAADLEGRPDEALDVIGQAIVLDPAFVPALMRRAYLLMAQERYAE 68 DP L +LM L+ +IA + + AL + QA+ LDP+F+P M+RA LL E Sbjct: 5 DPATLARLMGLMCDAIALRGAQQAEAALAALDQALALDPSFLPLYMQRADLLQEMGALPE 64 Query: 69 AIVAYDDCLQRFPALEEAAQSRHRAVILALDHCRIMLEERPQDAGLLCGQAALLE----- 123 AI A CL P +EA ++ HR++ L E + D G G AAL++ Sbjct: 65 AIAACAACLDLAPDYDEA-RALHRSL---LQRWATQCELQTADEGA-SGSAALIDLARAR 119 Query: 124 -RLGRFDEALASLDRAL--GYAPTHQQALNQRGNVLLHLNRHEEAVLCYDRILAQSAVNA 180 +L + ALA+++RAL G A AL+ ++LL LNRHEEA+ CY + A Sbjct: 120 LQLDQPLPALAAVERALASGQAGLALHALH--ADILLRLNRHEEALECYPPAADEDQARA 177 Query: 181 AAIFNRGNVLQKMNCINQALWCYEQALTLQPNFPEAEMAQSHCLLLQGDFAGGWQHHEAR 240 FN ++L++M I QA +EQAL P+FPEAE+ ++H LL Q +A GW+ HEAR Sbjct: 178 LHAFNMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVGRAHMLLSQQHYAEGWRAHEAR 237 Query: 241 WRTSQLRDQGLFPHEPAWLGEPSLAGRSILLWAEQGLGDTIQFARYIPLVADLAAQVTVC 300 + ++L +G+ P W + G+ +LLWAEQG GDT+QFARYIPLVA AA+V++C Sbjct: 238 FGIAELARRGIDSPRPRWRAGEPVRGKRVLLWAEQGQGDTLQFARYIPLVAQQAAEVSLC 297 Query: 301 VPESLRRLLASLTALPNVTLVSNDKALTPHDFHCPLMSLPLALSWTLATIPAAVPYLHAD 360 P SL +LA LP V ++N HD H L+SLPL L PYL A Sbjct: 298 APASLLAVLAP--CLPQVRCMANPGEAPDHDLHASLLSLPLLLGLPDPRQGPPSPYLAAQ 355 Query: 361 IELKQQWSAVLG---PASPRL-RVGLAWAGRQYGERNHTRDIPLSHLRPLAEIEVELVSL 416 + QQW A L PA PR R+G+AWAGRQY +H+RDIPL L PL + + VSL Sbjct: 356 PQRVQQWQAYLSALWPAMPRRPRLGIAWAGRQYATVHHSRDIPLDALAPLWTLPADFVSL 415 Query: 417 QQQIPAGDLAELAQWA-RMHRLEAAMTDMAETAALIDNLDLVISADTAVIHLAGALGKPA 475 Q ++PAGD A A A R+H + D A+TAAL+ LDLVIS DTAV+HLAGALG P Sbjct: 416 QVEVPAGDQAAHATLAQRLH--TPTLVDWADTAALLCALDLVISVDTAVVHLAGALGVPC 473 Query: 476 WLLLRYESEWRWGWQTGSSRWYPTVKVFRQQHRGDWSGVVEEV 518 L LRY+ EWRWG + + WYP++++ RQ+ RG W VVEE+ Sbjct: 474 LLPLRYDGEWRWGVKGSQTPWYPSLQLLRQRERGQWGPVVEEM 516 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 254 bits (648), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 200/556 (35%), Positives = 269/556 (48%), Gaps = 69/556 (12%) Query: 9 DPGHLQQLMTLLTQSIAADLEGRPDEALDVIGQAIVLDPAFVPALMRRAYLLMAQERYAE 68 +P HL T + A GR DEA+ + ++ FV AL+ R L R E Sbjct: 72 NPDHLD---TYFDHAGALAHLGRDDEAVARYDLVLTVNADFVEALLARGAALRRLGRNRE 128 Query: 69 AIVAYD-----------------DCLQRFPALEEAAQSRHRAVILALDHCRIMLEERPQD 111 A+ + + L A +A +S RAV L D + Sbjct: 129 ALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEAWF-----N 183 Query: 112 AGLLCGQAALLERLGRFDEALASLDRALGYAPTHQQALNQRGNVLLHLNRHEEAVLCYDR 171 G C + D+AL + DRAL P +A++ RG VL + R EA+ YDR Sbjct: 184 LGNTCKDG------NQLDQALRAYDRALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDR 237 Query: 172 ILAQSAVNAAAIFNRGNVLQKMNCINQALWCYEQALTLQPNFPEAEMAQSHCLLLQGDFA 231 LA FNRG+ L+++ +A Y +A L+P+ A ++ L QGDF Sbjct: 238 ALALDERAPDLWFNRGSTLEQLYRFEEASESYRRAKALKPDAGSATWNEALMQLRQGDFV 297 Query: 232 GGWQHHEARWRTSQLRDQGLFPHEPAWLGEPSLAGRSILLWAEQGLGDTIQFARYIPLVA 291 GW+ E RW T Q+R Q +P WLGE L G++ILL AEQG GDT+QF RY PL+A Sbjct: 298 NGWKGFETRWATEQMRGQQRQFMQPLWLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLA 357 Query: 292 DLAAQVTVCVPESLRRLLASLTALPNVT-LVSNDKALT-PHDFHCPLMSLPLAL-SWTLA 348 A+V + V +L R LA LP VT ++ D + P DFHCPLMSLPLA +++ A Sbjct: 358 ARGARVILEVQPALTRQLA---GLPGVTQVIGTDHFMRPPFDFHCPLMSLPLACKTFSEA 414 Query: 349 TIPAAVPYLHADIELKQQWSAVLGPASPRLRVGLAWAG----------RQYGERNHTRDI 398 IP A PYL + W L P + LRVGL WAG R GER+ + Sbjct: 415 DIPRA-PYLLPEASSWAAWHQRL-PRNRALRVGLVWAGSSAQTHPDAVRIDGERS----L 468 Query: 399 PLSHLRPLAEI-----EVELVSLQ------QQIPAGDLAELAQWARMHRLEAAMTDMAET 447 P + L PL E+ +E SLQ Q+ A LA L + + D AET Sbjct: 469 PFATLAPLVELAREHAALEFYSLQVGQDAVAQLHAHPLASL-----VRDCSPELHDFAET 523 Query: 448 AALIDNLDLVISADTAVIHLAGALGKPAWLLLRYESEWRWGWQTGSSRWYPTVKVFRQQH 507 AL+ NLDL+I+ DT+V HLAGALG+P WLL R+ WRW + S WY + +F Q+ Sbjct: 524 GALLANLDLLITVDTSVCHLAGALGRPVWLLNRHNGCWRWQVEREDSPWYGGMTIFGQRT 583 Query: 508 RGDWSGVVEEVAECLR 523 G W V+ V L+ Sbjct: 584 AGQWDEVIARVRAALQ 599 Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 53/112 (47%) Query: 105 LEERPQDAGLLCGQAALLERLGRFDEALASLDRALGYAPTHQQALNQRGNVLLHLNRHEE 164 +E P A L LGR DEA+A D L +AL RG L L R+ E Sbjct: 69 IELNPDHLDTYFDHAGALAHLGRDDEAVARYDLVLTVNADFVEALLARGAALRRLGRNRE 128 Query: 165 AVLCYDRILAQSAVNAAAIFNRGNVLQKMNCINQALWCYEQALTLQPNFPEA 216 A+ +R A + NA A F RGNVL A YE+A+ L+P+F EA Sbjct: 129 ALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEA 180 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 231 bits (590), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 176/506 (34%), Positives = 245/506 (48%), Gaps = 46/506 (9%) Query: 31 RPDEALDVIGQAIVLDPAFVPALMRRAYLLMAQERYAEAIVAYDDCLQRFPALEEAAQSR 90 R +EA+ VI +++ L +F P+ A E Y EAI + Sbjct: 175 RYNEAVAVILKSLELQISFAPSHTALGEAFHAMEMYKEAIES------------------ 216 Query: 91 HRAVILALDHCRIMLEERPQDAGLLCGQAALLERLGRFDEALASLDRALGYAPTHQQALN 150 H+ IL LD PQD A +L R DEA L R + AP A Sbjct: 217 HKTAIL-LD---------PQDTYAHNKIADSYLKLNRIDEAHEHLLRVIEIAPKDPNAYV 266 Query: 151 QRGNVLLHL-NRHEEAVLCYDRILAQSAVNAAAIFNRGNVLQKMNCINQALWCYEQALTL 209 + G+ +R ++A+ +++ L + +A N G + + A+ + +AL L Sbjct: 267 KLGSSYFSTSDRFDDAMRMFNKALEVDSKHALTYNNIGAIQHDHGDLEDAIGNFRKALEL 326 Query: 210 QPNFPEAEMAQSHCLLLQGDFAGGWQHHEARWRTSQLRD-----QGLFPHEPAWLGEPSL 264 +PN+P A + LLLQG GW+ HE+R T + LF P W G+ SL Sbjct: 327 RPNYPTARHNIALSLLLQGHLKEGWECHESRLVTRERSHVYRLIHKLFDLIPKWDGKSSL 386 Query: 265 AGRSILLWAEQGLGDTIQFARYIPLVADLAAQVTVCVPESLRRLLASLTALPNVTLVSND 324 AG+ ILL EQG GD+IQF RY+ +V D A+V + V L RL S + P VTLV Sbjct: 387 AGKYILLMHEQGFGDSIQFLRYVRMVLDQGARVALHVKNPLYRLFQSYS--PEVTLVRES 444 Query: 325 KALTPHDFHCPLMSLPLAL-SWTLATIPAAVP--YLHADIELKQQWSAV---LGPASPRL 378 L P D LMSLP A+ + T+ IP+ VP YL AD LK W L + +L Sbjct: 445 DPLPPCDCAYVLMSLPYAMGTDTVDDIPS-VPGGYLSADPILKSSWGEKIRQLSQSPEKL 503 Query: 379 RVGLAWAGR-QYGERNHTRDIPLSHLRPLAEI-EVELVSLQQQIPAGDLAELAQWARMHR 436 RVG+ W G ++G H R I + L ++ +E SLQ+ P L + Sbjct: 504 RVGVVWGGNPEHGNDRH-RSIAMDKFATLFQLPNIEFYSLQKGKPLDAFKALPPGLPIFN 562 Query: 437 LEAAMTDMAETAALIDNLDLVISADTAVIHLAGALGKPAWLLLRYESEWRWGWQTGSSRW 496 L D A+TAA I NLDLV+S DT+V+HLAGALG P W+LL + +WRW S W Sbjct: 563 LGDDCQDFADTAAAIANLDLVVSVDTSVVHLAGALGHPTWVLLPHVPDWRWLQDREDSPW 622 Query: 497 YPTVKVFRQQHRGDWSGVVEEVAECL 522 YP +++FRQ DW V+ +V + L Sbjct: 623 YPGMRLFRQPALSDWESVLTKVGQEL 648 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 206 bits (524), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 158/419 (37%), Positives = 213/419 (50%), Gaps = 11/419 (2%) Query: 105 LEERPQDAGLLCGQAALLERLGRFDEALASLDRALGYAPTHQQALNQRGNVLLHLNRHEE 164 L+ P A +AAL ER ++D A + +AL Q G V + EE Sbjct: 140 LQRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQRAQYWLAAGLVEHAQGQFEE 199 Query: 165 AVLCYDRILAQSAVNAAAIFNRGNVLQKMNCINQALWCYEQALTLQPNFPEAEMAQSHCL 224 A+ YD+ L + A +RG L ++ +A+ Y +AL + +A + + L Sbjct: 200 ALRYYDQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRRALRIDDKDADAHLNLALSL 259 Query: 225 LLQGDFAGGWQHHEARWRTSQLRDQGLFPHE--PAWLGEPSLAGRSILLWAEQGLGDTIQ 282 L+ G W +E RW R + H PAW G SLAG+ ILLWAEQG GDTIQ Sbjct: 260 LVLGRLEQAWPLYEWRWEG---RSADPYRHATIPAWNGGSSLAGKRILLWAEQGQGDTIQ 316 Query: 283 FARYIPLVADLAAQVTVCVPESLRRLLASLTALPNVTLVSNDKALTPHDFHCPLMSLPLA 342 F+RY+ L+ AQV + VP SL L+ SL +TLV+ + L DF PLMSLPL Sbjct: 317 FSRYVALILQAGAQVVLEVPASLLALMHSLAVPTPLTLVAMGEPLPEVDFQLPLMSLPLV 376 Query: 343 LSWTLATIPAAVPYLHADIELKQQWS---AVLGPASP-RLRVGLAWAGRQYGERNHTRDI 398 + IPAAVPYL AD + W A L P SP R+R+GL +G + R I Sbjct: 377 CNTRADDIPAAVPYLCADPARRILWEERLATLAPRSPARMRIGLVCSGNAGNVNDARRSI 436 Query: 399 PLSHLRP--LAEIEVELVSLQQQIPAGDLAELAQWARMHRLEAAMTDMAETAALIDNLDL 456 LS P LA +++ +Q + D Q H + AA+ D A+TAA++ +DL Sbjct: 437 ELSRFAPLALARPQLDFFVIQPDLRQADRQWCEQQPGWHWVGAAINDFADTAAVLAGMDL 496 Query: 457 VISADTAVIHLAGALGKPAWLLLRYESEWRWGWQTGSSRWYPTVKVFRQQHRGDWSGVV 515 VIS DTA HLAGA+ P W+ L Y +WRW S WYPT ++FRQQ G W V+ Sbjct: 497 VISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAADSPWYPTARLFRQQQPGAWDDVI 555 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,715,770 Number of extensions: 72830 Number of successful extensions: 287 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 258 Number of HSP's successfully gapped: 5 Length of query: 528 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 438 Effective length of database: 1,193,720 Effective search space: 522849360 Effective search space used: 522849360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)