BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0057.p (300 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310412|ref|YP_003774504.1| spermidine/putrescine ABC trans... 117 8e-28 gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permeas... 79 5e-16 gi|300310411|ref|YP_003774503.1| spermidine/putrescine ABC trans... 71 1e-13 gi|300312150|ref|YP_003776242.1| molybdate ABC transporter perme... 56 4e-09 >gi|300310412|ref|YP_003774504.1| spermidine/putrescine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 427 Score = 117 bits (294), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 69/176 (39%), Positives = 105/176 (59%), Gaps = 3/176 (1%) Query: 71 TSAGYIRALGTTLWVAALTAVLCVLLAYP-AAWLLVSTRSRAWRTVLYVILISPLLTSVV 129 SA Y G TLW++A+ + +LLAYP A WL RA +L ++++ P TS++ Sbjct: 202 ESAIYRTIFGRTLWMSAVVTCITLLLAYPLAYWLSTMPERRA--NLLMILVLIPFWTSIL 259 Query: 130 IRTFAWIVLLAQNGLINDVLRRLGLIDAPLALLWNMKAVIVAYVQVMLPFAVLPLATSLG 189 +R AWIVLL GL+N L GL +PL L++N V ++ ++LPF +LPL + + Sbjct: 260 VRVAAWIVLLQSEGLVNKALMLAGLTQSPLELVFNRVGVYISMTHILLPFMILPLYSVMK 319 Query: 190 EIPAALPRASQSLGAGARHTFLHVVLPLTIPGMMSGAIIVFALAAGSYVTPLLIGG 245 +PA +A+ SLG+ F V +P T PG+ +G ++VF +A G Y+TP L+GG Sbjct: 320 SVPATYLKAAVSLGSHPFAAFWRVYVPQTYPGIGAGVLLVFIMAGGYYITPALLGG 375 >gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 79.0 bits (193), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 126/274 (45%), Gaps = 16/274 (5%) Query: 10 SRVSTSGNSLFSWLLLA-PGMLFLAAFLVVPGILLIVLSLHDVDGMLMVLPTYSFSHYIE 68 SR +GN + WL A PG+ AF ++P L+ + DG + L + HY Sbjct: 17 SRPRRAGNQV--WLCFAVPGLTLFCAFWLLPMARLVGVGASGPDGAMAYLSVLTNRHYFA 74 Query: 69 AFTSAGYIRALGTTLWVAALTAVLCVLLAYPAAWLLVSTRSRAWRTVLYVILISPLLTSV 128 + S L + V A T + V + L + + +L +L PL Sbjct: 75 SLVST-----LALSAAVTAATLAISVFVG-----LFLQRHRFPGQALLLAMLTFPLAFPG 124 Query: 129 VIRTFAWIVLLAQNGLINDVLRRLGLIDAPLALLWNMKAVIVAYVQVMLPFAVLPLATSL 188 V+ F I+L + GLI + GL L +++ + + Y+ +P +L + + Sbjct: 125 VVVGFMVIMLAGRQGLIGALTN--GLFGESLVFAYSLAGLFLGYLYFSIPRVILTVVAAA 182 Query: 189 GEIPAALPRASQSLGAGARHTFLHVVLPLTIPGMMSGAIIVFALAAGSYVTPLLIGGRLQ 248 ++ +L A++SLGA LHVVLP +P ++S I FA + G++ T + + Sbjct: 183 EKLDPSLEEAARSLGARPWQVLLHVVLPALLPALVSSGAICFATSVGAFGTAFTLAANID 242 Query: 249 PLLPIGIYQQALQIANLPLAAALSLTLLVVTAAI 282 +LP+ IY + AN AA+LS+ L V+T A+ Sbjct: 243 -VLPMTIYNEFTGYANFATAASLSIVLGVITWAV 275 >gi|300310411|ref|YP_003774503.1| spermidine/putrescine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 70.9 bits (172), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 118/254 (46%), Gaps = 19/254 (7%) Query: 39 PGILLIVLSLHDVDGMLMVLPTYSFSHYIEAFTSAGYIRALGTTLWVAALTAVLCVLLAY 98 P +++I LS D ++ + ++S Y F+S ++RA + VA V+ +L Sbjct: 36 PILVMIPLSFSDSSFLMYPIKSFSLRWYENLFSSDDWVRAAQNSFIVAPAATVIATVLGT 95 Query: 99 PAAWLLVSTRSRAWRTVLYVILISPLLTSVVIRTFAWIVLLAQNGLINDVLRRLGLIDAP 158 AA L R + +L ILISP++ VV+ + A R+GL D+ Sbjct: 96 LAAVGLNKADFRG-KGILMAILISPMIVPVVVVGVGVYLFFA----------RIGLSDSY 144 Query: 159 LALLWNMKAVIVAYVQVMLPFAVLPLATSLGEIPAALPRASQSLGAGARHTFLHVVLPLT 218 L L I+A+ + PF V + +L L RAS SLGA TF V LP+ Sbjct: 145 LGL-------ILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGASPLRTFFRVTLPVI 197 Query: 219 IPGMMSGAIIVFALAAGSYVTPLLIGGRLQPLLPIGIYQQALQIANLPLAAALSLTLLVV 278 PG++SGA+ FA + V L + G Q LP ++ ++ P AAL+ L++ Sbjct: 198 APGLISGALFAFATSFDEVVLTLFVAGPEQATLPRQMF-AGIKDNISPTIAALATILIIF 256 Query: 279 TAAIAGLMSYVQKR 292 + + + +++ R Sbjct: 257 STCLLLALEWLRGR 270 >gi|300312150|ref|YP_003776242.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 55.8 bits (133), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 5/166 (3%) Query: 82 TLWVAALTAVLCVLLAYPAAWLLVSTRSRAWRTVLYVILISPLLTSVVIRTFAWIVLLAQ 141 TL +A++ VL +LL P AW L TRS WR + ++ PL+ + F +VL+ Sbjct: 14 TLSLASIVTVLLLLLGTPLAWWLARTRS-GWRHGVAAVVALPLVLPPAVLGFYLLVLMGP 72 Query: 142 NGLINDVLRRLGLIDAPLALLWNMKAVIVAYVQVMLPFAVLPLATSLGEIPAALPRASQS 201 G + + + LGL P ++ +++A + +PF V PL + + + + Sbjct: 73 QGPVGQLTQALGLGLLP----FSFGGLVLASLLYSMPFVVQPLQNAFEAVGERPMEVAAT 128 Query: 202 LGAGARHTFLHVVLPLTIPGMMSGAIIVFALAAGSYVTPLLIGGRL 247 L A F V +PL PG ++ A++ FA G + L+IGG + Sbjct: 129 LRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNI 174 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.140 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 835,345 Number of extensions: 32191 Number of successful extensions: 236 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 229 Number of HSP's successfully gapped: 12 Length of query: 300 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 215 Effective length of database: 1,217,395 Effective search space: 261739925 Effective search space used: 261739925 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)