BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0055.p (311 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 235 4e-63 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 233 1e-62 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 231 8e-62 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 230 1e-61 gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 226 2e-60 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 235 bits (599), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 115/233 (49%), Positives = 160/233 (68%) Query: 1 MSAIDIHGVAHRFGDLQALAGVDLSIAQGEFFSLLGPSGCGKTTLLNIIAGFLAPSAGTV 60 M+AI + GV +G+ QA+ +D + G+F LLGPSGCGK+T L +IAG PS+G++ Sbjct: 1 MAAISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSI 60 Query: 61 VVGGRDVTSLPPHRRDIGMVFQSYALFPHLNVFDNVAYGLRVRKAKGEDVRARVAEMLEL 120 +GGRDVT LPP +R I MVFQSYALFPHL+V DN+ +G+RVRK R+ + ++ Sbjct: 61 HIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADI 120 Query: 121 VRLSELAQRMPHQLSGGQQQRVAIARALAIRPQVLLLDEPLSNLDAKLRKEMQTELRRLL 180 + L+ L +R P QLSGGQQQRVA+ RA+ V L+DEPLSNLDA+LR+EM+ E+R L Sbjct: 121 LGLAHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 Query: 181 GNVGVTTVMVTHDQEEALGLSDRIGILGAGRLQQVGTPLELYRRPVNRFVGEF 233 + +T V VTHDQ EA+ ++D++ +L GR++Q P +LY +P F F Sbjct: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARF 233 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 233 bits (594), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 117/235 (49%), Positives = 163/235 (69%), Gaps = 4/235 (1%) Query: 3 AIDIHGVAHRFGDLQALAGVDLSIAQGEFFSLLGPSGCGKTTLLNIIAGFLAPSAGTVVV 62 +I++H + RFG AL V L+ GE +LLGPSGCGKTTLL IIAG +P +G V++ Sbjct: 2 SIEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLL 61 Query: 63 GGRDVTSLPPHRRDIGMVFQSYALFPHLNVFDNVAYGLRVR----KAKGEDVRARVAEML 118 G D ++ R +G VFQ YALF H+ VF+N+A+GLRV+ + +R +V +L Sbjct: 62 DGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRLL 121 Query: 119 ELVRLSELAQRMPHQLSGGQQQRVAIARALAIRPQVLLLDEPLSNLDAKLRKEMQTELRR 178 ELV+L LA R P QLSGGQ+QR+A+ARALA+ P+VLLLDEP LDAK+RKE++ LRR Sbjct: 122 ELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRR 181 Query: 179 LLGNVGVTTVMVTHDQEEALGLSDRIGILGAGRLQQVGTPLELYRRPVNRFVGEF 233 L + VT++ VTHDQEEAL ++D++ ++ G+++Q+GTP +Y P + FV F Sbjct: 182 LHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGF 236 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 231 bits (588), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 117/226 (51%), Positives = 159/226 (70%), Gaps = 1/226 (0%) Query: 17 QALAGVDLSIAQGEFFSLLGPSGCGKTTLLNIIAGFLAP-SAGTVVVGGRDVTSLPPHRR 75 +AL +DL I GE LLGPSGCGKTT L +IAG P G V+ G DVT LP +R Sbjct: 24 RALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEGGRVLFGEEDVTMLPIEKR 83 Query: 76 DIGMVFQSYALFPHLNVFDNVAYGLRVRKAKGEDVRARVAEMLELVRLSELAQRMPHQLS 135 +GMVFQ+YALFP+++V +N+AYG+++RK + RV +LE+V L L+ R QLS Sbjct: 84 GVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERVERLLEMVHLQGLSHRRVDQLS 143 Query: 136 GGQQQRVAIARALAIRPQVLLLDEPLSNLDAKLRKEMQTELRRLLGNVGVTTVMVTHDQE 195 GGQ+QRVA+ARALA+ P+VLLLDEPL+ LDAKLR+ ++++L +LL ++G+T + VTHDQ Sbjct: 144 GGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLRSLGITAIYVTHDQG 203 Query: 196 EALGLSDRIGILGAGRLQQVGTPLELYRRPVNRFVGEFPAKACRCN 241 EA+ L DRI ++ G++ Q+GTP E+Y P N FV EF R + Sbjct: 204 EAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFIGAMNRVD 249 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 230 bits (587), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 117/221 (52%), Positives = 152/221 (68%), Gaps = 6/221 (2%) Query: 19 LAGVDLSIAQGEFFSLLGPSGCGKTTLLNIIAGFLAPSAGTVVVGGRDVTS------LPP 72 L GV + + +GE +LLGPSG GKTTLL +AG +P AG + +G R V +P Sbjct: 23 LKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGAIDIGKRRVFDGARNFEMPA 82 Query: 73 HRRDIGMVFQSYALFPHLNVFDNVAYGLRVRKAKGEDVRARVAEMLELVRLSELAQRMPH 132 R++G+VFQSYAL+PH V DNVAYGL++RK ++ RV +L + L L +R PH Sbjct: 83 EERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSGEIATRVKAVLSQLGLGHLGERYPH 142 Query: 133 QLSGGQQQRVAIARALAIRPQVLLLDEPLSNLDAKLRKEMQTELRRLLGNVGVTTVMVTH 192 QLSGGQQQRVAIARAL PQV+LLDEPLSNLDAKLR+E + LR L+ +G++ +MVTH Sbjct: 143 QLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALMVTH 202 Query: 193 DQEEALGLSDRIGILGAGRLQQVGTPLELYRRPVNRFVGEF 233 DQ EA+ +SDRI +L GR++Q GTP +Y+ P F EF Sbjct: 203 DQGEAMAISDRILLLNNGRIEQQGTPQSMYQAPNTLFTAEF 243 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 226 bits (576), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 124/234 (52%), Positives = 160/234 (68%), Gaps = 2/234 (0%) Query: 4 IDIHGVAHRFGDLQALAGVDLSIAQGEFFSLLGPSGCGKTTLLNIIAGFLAPSAGTVVVG 63 + + V RFG AL V L + +GE LLGPSGCGKTTLL IAG +G + Sbjct: 13 LSVREVEKRFGSFTALDRVSLEVRRGEMVCLLGPSGCGKTTLLRTIAGLERQDSGRLHAD 72 Query: 64 GRDVTSLPPHRRDIGMVFQSYALFPHLNVFDNVAYGLRVRKAKGEDVRARVAEMLELVRL 123 GRD++ LPP RD G++FQSYALFP+L+V DNVAYGL + + R RV EML +V L Sbjct: 73 GRDISQLPPQARDYGILFQSYALFPNLSVADNVAYGLG--RMSRQQKRERVTEMLSMVGL 130 Query: 124 SELAQRMPHQLSGGQQQRVAIARALAIRPQVLLLDEPLSNLDAKLRKEMQTELRRLLGNV 183 + P QLSGGQQQRVA+ARALA P +LLLDEPLS LDA++R+ +Q E+RRL Sbjct: 131 DGSQDKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQF 190 Query: 184 GVTTVMVTHDQEEALGLSDRIGILGAGRLQQVGTPLELYRRPVNRFVGEFPAKA 237 +TT+MVTHDQEEA+ ++DRI ++ GR++Q GTP ++YRRP FV +F +A Sbjct: 191 RITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPEQIYRRPATPFVADFIGQA 244 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.139 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 940,930 Number of extensions: 39106 Number of successful extensions: 601 Number of sequences better than 1.0e-08: 134 Number of HSP's gapped: 360 Number of HSP's successfully gapped: 148 Length of query: 311 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 226 Effective length of database: 1,217,395 Effective search space: 275131270 Effective search space used: 275131270 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)