BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0047.p
         (244 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313937|ref|YP_003778029.1| hypothetical protein Hsero_4655...    68   8e-13

>gi|300313937|ref|YP_003778029.1| hypothetical protein Hsero_4655
           [Herbaspirillum seropedicae SmR1]
          Length = 503

 Score = 67.8 bits (164), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 7/118 (5%)

Query: 7   PIVASLDLHANVSQKMIGHADVLVAYRTYPHVDMAATGARAFNWIERRLAGAPRAHVAWL 66
           P+  +LDLH NV+QKM+ HADV+V+++TYPH+DM  TG  A   +  RL G  +  +AW 
Sbjct: 129 PMAVALDLHGNVTQKMVTHADVIVSFKTYPHIDMFETGEHAGRLLLARLRGRSQPRMAWR 188

Query: 67  RAPYLIPMCWQCTDDAPARDLYALLDHVNAAGKD----SASFTMGFPAADVEKCGPAV 120
           + P L       T +  A  +   ++   AA ++    + S   GFP +D    G +V
Sbjct: 189 QVPML---SATLTSNTSASAMQRAVEAAKAAEQEPGVLAVSVLAGFPLSDFRDAGMSV 243


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 754,930
Number of extensions: 30743
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,226,865
Effective search space: 197525265
Effective search space used: 197525265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)