BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0043.p
         (123 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311512|ref|YP_003775604.1| membrane protease stomatin/proh...   176   5e-46

>gi|300311512|ref|YP_003775604.1| membrane protease
           stomatin/prohibitin protein [Herbaspirillum seropedicae
           SmR1]
          Length = 303

 Score =  176 bits (446), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 105/120 (87%), Positives = 112/120 (93%)

Query: 2   KSALIAASEGRKQEQINIATGEREASIAKSEGEKQASINRAEGQAAAIIAIANASAEALR 61
           K ALIAASEGRKQEQINIATGEREA+IA+SEGEKQASIN AEGQAAAI+AIA ASAEA+R
Sbjct: 183 KRALIAASEGRKQEQINIATGEREAAIARSEGEKQASINGAEGQAAAILAIAEASAEAIR 242

Query: 62  KTAAAIQSPGGEEAVNLKVAEQYVAAFSQLAKTNNSIIVPANLSDMSTLIASALQVVKAQ 121
           KTAAAIQ PGGE+AVNLKVAEQYV AF +LAKTNNSIIVPANLSDMS LIASALQV+K Q
Sbjct: 243 KTAAAIQQPGGEDAVNLKVAEQYVDAFGKLAKTNNSIIVPANLSDMSGLIASALQVIKQQ 302


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.305    0.117    0.283 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 251,887
Number of extensions: 6406
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 49
Effective length of database: 1,269,480
Effective search space: 62204520
Effective search space used: 62204520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 125 (52.8 bits)