BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0040.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311509|ref|YP_003775601.1| ATP-binding protein [Herbaspiri...   506   e-145

>gi|300311509|ref|YP_003775601.1| ATP-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score =  506 bits (1302), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 241/265 (90%), Positives = 256/265 (96%)

Query: 1   VFFVSDGTGITAETLGHSVLSQFELRFKQVRLPFVDTLDKAYDATRRINEVAEVDGKAPI 60
           VFFVSDGTGITAET GHSVLSQFELRFKQVRLPF+DTLDKA+DATR+INE  +VDGK PI
Sbjct: 16  VFFVSDGTGITAETFGHSVLSQFELRFKQVRLPFIDTLDKAHDATRKINEAYQVDGKLPI 75

Query: 61  VFSTLVKADLSAVIRQSRAMHMDLFQTFVEPLEQELGVKSTHTIGRSHNTADSEEYKNRI 120
           VFSTLVK++LS+VIRQ++AMHMDLFQTFVEPLEQEL +KSTHTIGRSHNTADSEEY+NRI
Sbjct: 76  VFSTLVKSELSSVIRQAKAMHMDLFQTFVEPLEQELEMKSTHTIGRSHNTADSEEYRNRI 135

Query: 121 EAINFSLAHDDGQSNKNLASADVILVGVSRSGKTPTSLYLAMQYGIKAANYPLIPEDFER 180
           EAINFSLAHDDGQSNKNL+ ADVILVGVSRSGKTPTSLYLAMQ+GIKAANYPLIPEDFER
Sbjct: 136 EAINFSLAHDDGQSNKNLSEADVILVGVSRSGKTPTSLYLAMQFGIKAANYPLIPEDFER 195

Query: 181 DKLPSGLVNFKKKIFGLTIAAERLSEVRNERRPGSKYAAIENCRYEINEAEKMMRREGIR 240
           DKLPSGLV  KKKIFGLTIAAERLSEVRNERRPGSKYA++ENCRYEINEAEKMMRREGIR
Sbjct: 196 DKLPSGLVMHKKKIFGLTIAAERLSEVRNERRPGSKYASLENCRYEINEAEKMMRREGIR 255

Query: 241 WMSSTAKSIEEIAATILQEIKPETR 265
           WMSSTAKSIEEIAATILQEIKPE R
Sbjct: 256 WMSSTAKSIEEIAATILQEIKPEPR 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 736,879
Number of extensions: 27629
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)