BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0037.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311507|ref|YP_003775599.1| ribonuclease HII protein [Herba...   341   3e-95

>gi|300311507|ref|YP_003775599.1| ribonuclease HII protein
           [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score =  341 bits (874), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 163/197 (82%), Positives = 182/197 (92%)

Query: 10  SLFAFDNYVGEIICGVDEAGRGPLAGPVFAAAVILDPARPIVGLRDSKKLSEASRDALAL 69
           +L  FD+Y GEIICGVDEAGRGPLAGPVFAAAVILDPARP+ GLRDSKKL+EA+RD+LAL
Sbjct: 8   TLALFDDYTGEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEAARDSLAL 67

Query: 70  EIKDRAIAWAIAECSENEIDQLNILHASMLAMRRAVEALETIPTLALIDGNRCPVMTIRS 129
           EIK  A+AWA+A C+E EID+LNILHASMLAMRRAVEAL T+PTLALIDGNRCPVM+IRS
Sbjct: 68  EIKASALAWAVASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPVMSIRS 127

Query: 130 EAIIKGDDKVPAISAASILAKTARDAALLVLHAQYPNYAFDQHKGYPTALHLERLQLHGV 189
           EAI+KGDDKVPAISAASILAKTARDAAL+VLH  YP+Y FD+HKGYPT LHLE L+LHGV
Sbjct: 128 EAIVKGDDKVPAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGV 187

Query: 190 SPVHRKSYAPVRALLNA 206
           SPVHR+SYAPV+ALL A
Sbjct: 188 SPVHRRSYAPVKALLTA 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 640,369
Number of extensions: 25252
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)